Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AD178_RS08945 Genome accession   NZ_OX244288
Coordinates   1753480..1754190 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain PT8105 isolate 2RLC4     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1748480..1759190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AD178_RS08930 (SAMEA1463109_01802) - 1749021..1749269 (-) 249 WP_000364983.1 YneF family protein -
  AD178_RS08935 (SAMEA1463109_01803) treC 1749525..1751150 (-) 1626 WP_000171204.1 alpha,alpha-phosphotrehalase -
  AD178_RS08940 (SAMEA1463109_01804) treP 1751328..1753295 (-) 1968 WP_000514336.1 PTS system trehalose-specific EIIBC component -
  AD178_RS08945 (SAMEA1463109_01805) treR 1753480..1754190 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  AD178_RS08950 (SAMEA1463109_01806) - 1754223..1755026 (-) 804 WP_000202631.1 ATP-binding cassette domain-containing protein -
  AD178_RS08955 (SAMEA1463109_01807) - 1755039..1755932 (-) 894 WP_001012092.1 ABC transporter permease -
  AD178_RS08960 (SAMEA1463109_01809) - 1755944..1756881 (-) 938 Protein_1780 ABC transporter substrate-binding protein -
  AD178_RS08965 (SAMEA1463109_01810) - 1757430..1758686 (+) 1257 WP_000530082.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=1154336 AD178_RS08945 WP_000760673.1 1753480..1754190(+) (treR) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1154336 AD178_RS08945 WP_000760673.1 1753480..1754190(+) (treR) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment