Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   AD178_RS03060 Genome accession   NZ_OX244288
Coordinates   590017..590283 (+) Length   88 a.a.
NCBI ID   WP_001810535.1    Uniprot ID   A0A098Z1L6
Organism   Streptococcus pneumoniae strain PT8105 isolate 2RLC4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585017..595283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AD178_RS03040 (SAMEA1463109_00613) - 585272..585781 (+) 510 WP_000619950.1 N-acetyltransferase -
  AD178_RS03045 (SAMEA1463109_00614) pheT 585858..588263 (+) 2406 WP_000961562.1 phenylalanine--tRNA ligase subunit beta -
  AD178_RS03050 (SAMEA1463109_00615) - 588331..589332 (-) 1002 WP_000597988.1 endonuclease/exonuclease/phosphatase family protein -
  AD178_RS03055 - 589488..589891 (+) 404 Protein_603 helix-turn-helix domain-containing protein -
  AD178_RS03060 (SAMEA1463109_00616) HI0659 590017..590283 (+) 267 WP_001810535.1 helix-turn-helix transcriptional regulator Machinery gene
  AD178_RS03065 (SAMEA1463109_00617) metE 590544..592793 (+) 2250 WP_000108212.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AD178_RS03070 (SAMEA1463109_00618) metF 592857..593723 (+) 867 WP_000089965.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9608.13 Da        Isoelectric Point: 4.4893

>NTDB_id=1154312 AD178_RS03060 WP_001810535.1 590017..590283(+) (HI0659) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=1154312 AD178_RS03060 WP_001810535.1 590017..590283(+) (HI0659) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAGTC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098Z1L6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.74

87.5

0.523

Multiple sequence alignment