Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   AD178_RS02885 Genome accession   NZ_OX244288
Coordinates   556223..556372 (+) Length   49 a.a.
NCBI ID   WP_001818346.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PT8105 isolate 2RLC4     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 554633..555356 556223..556372 flank 867


Gene organization within MGE regions


Location: 554633..556372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AD178_RS02875 (SAMEA1463109_00578) blpM 555506..555760 (+) 255 WP_000379879.1 two-peptide bacteriocin subunit BlpM -
  AD178_RS02880 (SAMEA1463109_00579) blpN 555776..555979 (+) 204 WP_001099492.1 two-peptide bacteriocin subunit BlpN -
  AD178_RS02885 (SAMEA1463109_00580) cipB 556223..556372 (+) 150 WP_001818346.1 bacteriocin-like peptide BlpO Regulator

Sequence

Protein


Download         Length: 49 a.a.        Molecular weight: 5134.91 Da        Isoelectric Point: 3.9133

>NTDB_id=1154311 AD178_RS02885 WP_001818346.1 556223..556372(+) (cipB) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
MDTKMMSQFAVMDNEMLACVEGGDIDWGRKISCAAGVAYGAIDGCATTV

Nucleotide


Download         Length: 150 bp        

>NTDB_id=1154311 AD178_RS02885 WP_001818346.1 556223..556372(+) (cipB) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
ATGGATACAAAAATGATGTCACAATTTGCAGTTATGGATAATGAAATGCTTGCTTGCGTTGAAGGTGGAGATATTGATTG
GGGAAGAAAAATTAGTTGTGCAGCAGGGGTTGCATATGGCGCAATTGATGGGTGTGCAACAACGGTTTGA

Domains

Predicted by InterproScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(6-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

51.02

100

0.51

Multiple sequence alignment