Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LQV24_RS13535 Genome accession   NZ_OW969711
Coordinates   2803335..2803958 (-) Length   207 a.a.
NCBI ID   WP_200030917.1    Uniprot ID   -
Organism   Citrobacter koseri isolate 0     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2798335..2808958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQV24_RS13520 (AN2353V1_2624) helD 2798576..2800630 (-) 2055 WP_230011352.1 DNA helicase IV -
  LQV24_RS13525 (AN2353V1_2625) - 2800754..2801200 (+) 447 WP_049008474.1 YccF domain-containing protein -
  LQV24_RS13530 (AN2353V1_2626) yccS 2801219..2803366 (+) 2148 WP_230011355.1 YccS family putative transporter -
  LQV24_RS13535 (AN2353V1_2627) sxy/tfoX 2803335..2803958 (-) 624 WP_200030917.1 TfoX/Sxy family DNA transformation protein Regulator
  LQV24_RS13540 (AN2353V1_2628) sulA 2804175..2804684 (+) 510 WP_049008471.1 SOS-induced cell division inhibitor SulA -
  LQV24_RS13545 (AN2353V1_2629) ompA 2805040..2806086 (+) 1047 WP_047463714.1 porin OmpA -
  LQV24_RS13550 (AN2353V1_2630) matP 2806161..2806613 (-) 453 WP_012132968.1 macrodomain Ter protein MatP -
  LQV24_RS13555 (AN2353V1_2631) - 2806799..2808559 (+) 1761 WP_200030914.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23983.71 Da        Isoelectric Point: 9.4100

>NTDB_id=1153643 LQV24_RS13535 WP_200030917.1 2803335..2803958(-) (sxy/tfoX) [Citrobacter koseri isolate 0]
MKLRSYDKIYKSQEYLASLGTVHYRSLFGSYSLTIEDTVFAMVAEGELYLRACEQSVAYCVKHSPVWLTFMKRGRPVMLN
YYRVDESLWRDQQQLVLLSQYSLDAAIKEKRTRFSQRRLKNLPNVTFHLENLLHEAGINDENTLRILGAKMCWLRLRESN
KLLTVKILYALEGAIAGVHEAALPAVRRQELAEWAQSLTPEHQKTTA

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1153643 LQV24_RS13535 WP_200030917.1 2803335..2803958(-) (sxy/tfoX) [Citrobacter koseri isolate 0]
ATGAAATTACGTTCCTATGACAAGATCTATAAATCACAAGAATATTTAGCCTCTCTGGGCACGGTTCACTATCGTTCGCT
GTTTGGTAGCTACAGCCTGACAATCGAGGATACGGTGTTTGCGATGGTGGCTGAGGGAGAGCTATACCTGCGCGCCTGTG
AGCAAAGCGTCGCGTACTGCGTGAAGCATTCCCCCGTCTGGTTAACATTTATGAAACGTGGCCGTCCCGTTATGTTGAAT
TATTACCGGGTGGATGAAAGCTTATGGCGCGATCAACAACAGCTGGTGCTTTTATCGCAGTATTCGCTGGATGCTGCCAT
AAAAGAAAAACGTACCCGTTTTTCACAACGTCGATTGAAGAATCTGCCAAACGTGACGTTTCATCTGGAGAACCTTCTGC
ATGAGGCCGGAATTAATGATGAAAACACATTGCGGATACTCGGCGCAAAAATGTGTTGGCTGCGGTTAAGAGAGAGCAAT
AAGCTGCTGACGGTGAAAATTCTCTATGCGTTAGAAGGGGCGATTGCTGGCGTACATGAAGCGGCGCTCCCGGCAGTACG
CCGCCAGGAGCTTGCTGAGTGGGCGCAGTCGCTTACGCCGGAGCACCAGAAGACGACGGCGTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.414

98.068

0.71

Multiple sequence alignment