Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LQV22_RS13470 Genome accession   NZ_OW969691
Coordinates   2802074..2802697 (-) Length   207 a.a.
NCBI ID   WP_071258272.1    Uniprot ID   A0AAW7F0H9
Organism   Citrobacter koseri isolate 0     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2797074..2807697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQV22_RS13455 (AN2351V1_2617) helD 2797315..2799369 (-) 2055 WP_012132961.1 DNA helicase IV -
  LQV22_RS13460 (AN2351V1_2618) - 2799493..2799939 (+) 447 WP_012132963.1 YccF domain-containing protein -
  LQV22_RS13465 (AN2351V1_2619) yccS 2799958..2802105 (+) 2148 WP_214143894.1 YccS family putative transporter -
  LQV22_RS13470 (AN2351V1_2620) sxy/tfoX 2802074..2802697 (-) 624 WP_071258272.1 TfoX/Sxy family DNA transformation protein Regulator
  LQV22_RS13475 (AN2351V1_2621) sulA 2802914..2803423 (+) 510 WP_012132966.1 SOS-induced cell division inhibitor SulA -
  LQV22_RS13480 (AN2351V1_2622) ompA 2803779..2804825 (+) 1047 WP_047463714.1 porin OmpA -
  LQV22_RS13485 (AN2351V1_2623) matP 2804900..2805352 (-) 453 WP_012132968.1 macrodomain Ter protein MatP -
  LQV22_RS13490 (AN2351V1_2624) - 2805538..2807298 (+) 1761 WP_012132969.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23941.62 Da        Isoelectric Point: 9.4100

>NTDB_id=1153620 LQV22_RS13470 WP_071258272.1 2802074..2802697(-) (sxy/tfoX) [Citrobacter koseri isolate 0]
MKLRSYDKIYKSQEYLASLGTVHYRSLFGSYSLTIEDTVFAMVAEGELYLRACEQSVAYCVKHSPVWLTFMKRGRPVMLN
YYRVDESLWRDQQQLVLLSQYSLDAAIKEKRTRFSQRRLKNLPNVTFHLENLLHEAGINDENTLRILGAKMCWLRLRESN
KLLTVKTLYALEGAIAGVHEAALPAVRRQELAEWAQSLTPEHQKATA

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1153620 LQV22_RS13470 WP_071258272.1 2802074..2802697(-) (sxy/tfoX) [Citrobacter koseri isolate 0]
ATGAAATTACGTTCCTATGACAAGATCTATAAATCACAAGAATATTTAGCCTCTCTGGGCACGGTTCACTATCGTTCGCT
GTTTGGTAGCTACAGCCTGACAATCGAGGATACGGTGTTTGCGATGGTGGCTGAGGGAGAGCTATACCTGCGCGCCTGTG
AGCAAAGCGTCGCGTACTGCGTGAAGCATTCCCCCGTCTGGTTAACATTTATGAAACGTGGCCGTCCCGTTATGTTGAAT
TATTACCGGGTGGATGAAAGCTTATGGCGCGATCAACAACAGCTGGTGCTTTTATCGCAGTATTCGCTGGATGCTGCCAT
AAAAGAAAAACGTACCCGTTTTTCACAACGTCGATTGAAGAATCTGCCAAACGTGACGTTTCATCTGGAGAACCTTCTGC
ATGAGGCCGGAATTAATGATGAAAACACATTGCGAATACTCGGCGCAAAAATGTGTTGGCTGCGGCTAAGAGAGAGCAAT
AAGCTGCTGACGGTGAAAACTCTCTATGCGTTAGAAGGGGCAATCGCTGGCGTACATGAAGCGGCGCTCCCGGCGGTACG
CCGCCAGGAGCTTGCTGAGTGGGCGCAGTCGCTTACGCCGGAGCACCAGAAGGCGACGGCGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

71.921

98.068

0.705

Multiple sequence alignment