Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   NB068_RS10005 Genome accession   NZ_OW969598
Coordinates   2005104..2007146 (+) Length   680 a.a.
NCBI ID   WP_250314857.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2000104..2012146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS09980 - 2000535..2001203 (+) 669 WP_250314854.1 response regulator transcription factor -
  NB068_RS09985 - 2001303..2002550 (+) 1248 WP_250314990.1 ATP-binding protein -
  NB068_RS09990 rng 2002589..2004082 (-) 1494 WP_250314855.1 ribonuclease G -
  NB068_RS09995 grxC 2004296..2004553 (+) 258 WP_250314856.1 glutaredoxin 3 -
  NB068_RS10000 secB 2004574..2005017 (+) 444 WP_003754271.1 protein-export chaperone SecB -
  NB068_RS10005 recG 2005104..2007146 (+) 2043 WP_250314857.1 ATP-dependent DNA helicase RecG Machinery gene
  NB068_RS10010 - 2007311..2009086 (-) 1776 WP_250314858.1 extracellular solute-binding protein -
  NB068_RS10290 - 2009353..2009698 (+) 346 Protein_1941 winged helix domain-containing protein -
  NB068_RS10015 - 2009707..2009934 (+) 228 WP_167395581.1 hypothetical protein -
  NB068_RS10295 - 2010403..2010543 (+) 141 Protein_1943 ATP-binding cassette domain-containing protein -
  NB068_RS10030 - 2010732..2011013 (+) 282 WP_002244020.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75058.95 Da        Isoelectric Point: 6.9710

>NTDB_id=1153559 NB068_RS10005 WP_250314857.1 2005104..2007146(+) (recG) [Neisseria sp. Marseille-Q6792]
MMSPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQI
ADGSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKIRDAESGGLAESLTPVYPTVNGLNQPTLRRII
QTALDVTPLHDTLPDALLCRLKLPHLAESLRFLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTA
AALGGDGTLTKALRHALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQAAVMAPTEI
LAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRL
ALKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLI
EESETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERM
GLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEE
DLHLLEQAREIAPLLIEQNPEIVEAHLARWLSSREGYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=1153559 NB068_RS10005 WP_250314857.1 2005104..2007146(+) (recG) [Neisseria sp. Marseille-Q6792]
ATGATGTCGCCCGAAACCCAGAAACAGCTCAAAATCACCGATGTTTCCGCCAAGAAGCTCGACAAACTCAACCTCCATAC
CGCGTGGGATTTGGTGTTGCACCTGCCGCTGCGTTACGAAGACGAGACGCACATTATGCCGATTAAGGACGCGCCGATCG
GCGTGCCGTGTCAGGTTGAGGGCGAGGTTATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGCTGATTGTCCAAATT
GCCGACGGCTCCGGCAGCGTCCTTTTTTTGCGCTTCATCCACTTTTACGCCAGCAACCAGAAACAGATGGCGGTCGGCAA
GCGCATCCGTGCTGTGGGCGAAATCAAACACGGGTTTCACGGCGATGAGATGATTCACCCTAAAATCCGCGATGCTGAGA
GCGGCGGTTTGGCAGAAAGCCTCACGCCTGTCTATCCGACCGTAAACGGTTTGAACCAGCCCACTTTGCGCCGCATCATT
CAGACGGCCTTGGACGTTACGCCGCTGCACGACACGCTGCCCGATGCCCTGCTGTGCCGTCTGAAGCTGCCGCACCTCGC
CGAAAGCCTGCGCTTTTTGCATTCGCCGCCGCCGAGTTTTACCATCCACCAGCTTTCCGACGGCGCGCTTCCCGCATGGC
AGCGGCTTAAATTCGACGAACTTTTGGCACAACAGTTGTCCATGCGGCTGGCGCGACAGAAGCGCGTCAGCGGCACGGCG
GCGGCATTGGGCGGCGACGGCACATTGACCAAAGCCCTGCGCCACGCCTTACCGTTTGCCCTGACCGATGCACAAGAAAA
AGTTGTTTCCGAAATCTGCCGTGATATGGCGCAAACCCACCCCATGCACCGCCTGTTGCAAGGCGATGTCGGCAGCGGCA
AAACCATCGTCGCCGCCTTGTCCGCCTTAACCGCCATCGAATCCGGCGCGCAGGCGGCCGTGATGGCGCCGACTGAAATC
CTTGCCGAACAGCATTTCATCAAGTTCAAACAATGGCTCGAGCCGTTAGGACTCGAAGTCGTCTGGCTCTCCGGCAGCCA
GCGCAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTCGCCGACGGCACCGTCAAAATCGCCGTCGGCACGCACGCCCTGT
TTTCAGACGACGTCGAGTTTCAAAATCTGGGCTTGGTGATTGTGGACGAACAACACCGCTTCGGCGTCGCCCAACGCCTC
GCCCTCAAAAACAAAGGGCGCGACGTCCACCAGCTGATGATGTCCGCCACGCCTATCCCGCGCACGCTTGCCATGAGTTT
CTTCGCCGACTTGGACGTATCCGTTATCGACGAATTGCCGCCCGGACGTACCCCGATTAAAACCCGCCTCGTCAACAACG
TCCGCCGCGCCGAAGTCGAAGGCTTCGTCCTCAACATCTGCCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCGCTGATT
GAAGAAAGCGAAACCCTGCAACTGCAAACCGCCACCGAAACCCTAGAGCAGCTTCAGGCGGCATTGCCCGAACTCAACAT
CGGCTTGGTACACGGGCGTATGAAGGCCGCCGAAAAAGCCGAAGTCATGGCGGAATTTGCCGCAGGCCGTCTGAACGTCT
TGGTTGCCACCACCGTCATCGAAGTCGGTGTAGATGTGCCCAATGCCGCCTTGATGGTGATCGAACACGCCGAGCGCATG
GGCTTGGCGCAGCTGCACCAGTTACGCGGGCGGGTAGGGCGTGGCGCGGCAGAAAGCGTGTGCGTCCTCCTATTTGCCGA
ACCCTTGAGCGAACTTGCCAAAGCGCGGCTGAAAGTCATCTACGAACACACCGACGGCTTTGAAATTGCCCGCCAAGACC
TCAACATCCGCGGCCCCGGCGAATTTCTCGGCGCGCGGCAAAGCGGCGTCCCCATGCTACGTTTTGCCAACCTTGAAGAA
GACTTACACCTTTTAGAACAAGCGCGCGAAATCGCCCCTTTGCTGATTGAACAAAACCCTGAAATCGTCGAGGCGCATTT
GGCAAGATGGCTTTCCAGCAGGGAAGGGTATTTGGGCGTGTAG

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(262-419)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-666)

RecG wedge domain (RecG_wedge)

(15-164)

Helicase conserved C-terminal domain (Helicase_C)

(468-575)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

94.265

100

0.943

Multiple sequence alignment