Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NB068_RS09290 Genome accession   NZ_OW969598
Coordinates   1838432..1840834 (+) Length   800 a.a.
NCBI ID   WP_349305008.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1833432..1845834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS10285 - 1837764..1838504 (+) 741 WP_349305002.1 hypothetical protein -
  NB068_RS09290 pilC 1838432..1840834 (+) 2403 WP_349305008.1 PilC family type IV pilus tip adhesin Machinery gene
  NB068_RS10210 - 1841707..1841829 (-) 123 WP_283255189.1 hypothetical protein -
  NB068_RS10215 - 1842188..1842310 (-) 123 WP_283255190.1 hypothetical protein -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 86309.69 Da        Isoelectric Point: 6.6026

>NTDB_id=1153554 NB068_RS09290 WP_349305008.1 1838432..1840834(+) (pilC) [Neisseria sp. Marseille-Q6792]
MAAPSYDDSGNIAAGSGKWEKPSVDGTKSKIADLPIRINNPGQQYGKAFQLRAKLHKLSDPGGDTITAQEIKLGEITTSK
IAMTSEGDTGNKGRTMTVWRIEDTGHIDVKLQLPGIGAGGCTRAQYTSAGPDGSQYAIVAPAPLGAGFPNKAAAVVTDPK
SASSRILFYTLNKDKKGENLGTDYLESKSFTEPVFTGRKTAIRLANGVSLSDSDNIAGGSNNAFNLSTLGDNQDEWKTVL
LRWTDRRDTNDNPFETFNNEIDAQTRGKLYGQQYRIRDNNKRNLGDIVNSPVTAVGNYLATAANDGMVHIFKRNNDGSYN
LKLSYIPGTMPRKNLDNQDSDLAKDLHNFANENYTGGLYGVDGGFVLRKVKDRVFMFGAMGQGGKGAYALDLTKAESGSP
TGVSLFDITGNGLGYTVGTPQIGKTQNGKYAAFLASGYAAKDINSQENQTALYVYDLESSGTLIKKIDVPGGKGGLSSPT
LVDTNSDGKVDIVYAGDRGGKMYRFDLGDNDPTRWSVRTIFQGTKPITSAPAISQLADKRVVIFGTGSDLTEDDVASQDI
QSVYGIFDDKKDSLVFAQEVMENELLKQELTQVPTKDGKILFLNNKEIGEHKGWAVDLLPGQRVTIKPTVVLRTAFVTIH
NYNANGCGAETAFLGIDTANGGELTKESARPVVPDDRVAKKVGEKKDAEGNDIPVGCMKKDDISLNLKNGDHKIICPSGY
VYPKLLTASYLDSQKTSDHPRTADGDTGGSGDDTDKPPKPGNRCFFSKGVHTLLMNDMSDLDVVGPICKMKRISWRELFF

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=1153554 NB068_RS09290 WP_349305008.1 1838432..1840834(+) (pilC) [Neisseria sp. Marseille-Q6792]
ATTGCAGCCCCGTCATACGACGACAGCGGCAATATTGCTGCAGGTTCGGGAAAATGGGAAAAACCGAGTGTAGACGGAAC
AAAATCAAAAATAGCTGATCTGCCTATACGAATAAACAACCCCGGCCAACAATATGGCAAGGCATTCCAGCTTCGCGCCA
AGCTGCATAAGCTCTCCGATCCCGGCGGCGATACCATTACCGCCCAAGAAATCAAACTGGGCGAAATTACTACATCTAAA
ATCGCTATGACTTCAGAGGGTGATACAGGGAATAAAGGTCGGACAATGACCGTATGGCGGATAGAAGACACCGGCCATAT
CGACGTAAAACTCCAGCTCCCGGGCATAGGCGCGGGTGGCTGCACTCGGGCACAATATACTTCCGCCGGACCGGACGGCA
GCCAATACGCCATTGTCGCCCCCGCCCCTTTGGGCGCGGGTTTCCCGAACAAGGCGGCAGCGGTCGTTACCGATCCCAAG
TCGGCAAGCAGCCGCATCCTCTTCTACACCTTGAATAAAGACAAGAAAGGAGAAAACCTAGGGACGGATTATCTGGAAAG
CAAAAGTTTTACCGAACCCGTCTTTACCGGACGCAAGACGGCAATCCGCTTGGCAAACGGCGTATCCTTGAGTGACAGCG
ATAATATTGCCGGCGGCTCGAACAACGCATTTAATCTCAGCACCTTGGGAGACAATCAAGACGAATGGAAAACCGTATTG
CTGCGCTGGACCGACCGGCGCGATACGAACGATAATCCGTTCGAAACATTTAACAATGAGATAGACGCTCAAACACGCGG
AAAACTGTATGGCCAGCAATACCGCATTCGCGACAACAACAAGCGCAATTTGGGCGACATCGTCAACAGTCCTGTAACGG
CGGTCGGCAACTATCTGGCAACCGCAGCGAACGACGGGATGGTGCATATTTTCAAACGCAACAATGACGGTAGCTACAAT
CTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCAAAAACTTGGATAACCAAGATTCCGATTTGGCAAAAGACCTGCA
CAACTTTGCCAACGAAAACTACACGGGCGGCCTGTACGGCGTGGACGGCGGCTTTGTCTTGCGCAAAGTCAAAGACCGCG
TGTTTATGTTCGGCGCGATGGGTCAGGGCGGCAAAGGTGCGTATGCCTTGGATTTGACCAAAGCCGAAAGCGGCAGCCCG
ACCGGCGTTTCCCTGTTTGACATAACAGGCAACGGCTTGGGCTACACCGTCGGCACGCCGCAAATCGGCAAAACCCAAAA
CGGCAAATACGCCGCCTTCCTTGCTTCCGGTTATGCCGCCAAAGATATTAACAGCCAGGAAAATCAAACCGCGCTGTATG
TGTATGATTTGGAAAGCAGCGGTACGCTGATTAAAAAAATCGATGTACCCGGCGGCAAGGGCGGGCTTTCATCCCCCACG
CTTGTCGATACAAATTCTGACGGCAAGGTCGATATCGTCTATGCTGGCGACCGCGGCGGCAAAATGTACCGCTTTGATCT
AGGCGACAACGACCCGACCAGATGGTCTGTACGCACTATTTTCCAAGGCACAAAACCGATTACTTCCGCGCCCGCTATTT
CCCAACTGGCAGACAAACGCGTCGTCATCTTCGGCACGGGCAGCGATTTGACTGAGGATGATGTGGCAAGCCAAGACATC
CAATCTGTTTACGGTATCTTTGATGATAAGAAGGATAGCTTGGTCTTTGCACAAGAAGTAATGGAAAATGAACTACTCAA
ACAAGAACTGACACAAGTGCCGACAAAAGATGGGAAAATACTGTTCTTGAATAATAAGGAAATAGGTGAGCACAAGGGCT
GGGCAGTAGATTTGCTACCCGGACAGCGCGTTACCATCAAACCGACCGTGGTATTGCGTACCGCCTTTGTAACCATCCAC
AACTACAATGCCAACGGCTGTGGTGCGGAAACCGCATTTTTGGGCATCGATACCGCCAACGGCGGCGAGCTGACGAAGGA
AAGCGCGCGCCCCGTCGTGCCGGATGACCGTGTCGCCAAAAAAGTCGGCGAGAAAAAAGACGCAGAAGGCAACGATATCC
CCGTGGGCTGTATGAAAAAAGACGATATTTCCTTGAACCTGAAGAACGGAGACCATAAAATTATCTGCCCGAGCGGATAT
GTTTATCCGAAACTGCTGACCGCGAGCTATCTGGACAGCCAAAAGACAAGCGATCACCCAAGAACGGCAGACGGCGACAC
GGGCGGCAGCGGCGATGATACTGACAAACCCCCAAAACCCGGCAACCGCTGCTTCTTCAGCAAAGGCGTGCACACGCTGC
TGATGAACGATATGTCCGACTTGGACGTTGTCGGTCCAATCTGTAAGATGAAACGCATCAGCTGGCGCGAACTCTTCTTC
TAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(294-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

53.226

100

0.536

Multiple sequence alignment