Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NB068_RS03835 Genome accession   NZ_OW969598
Coordinates   771881..773260 (-) Length   459 a.a.
NCBI ID   WP_012221465.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 766881..778260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS03820 recB 767059..770673 (+) 3615 WP_250314112.1 exodeoxyribonuclease V subunit beta Machinery gene
  NB068_RS03825 - 770712..771071 (+) 360 WP_250314113.1 rhodanese-like domain-containing protein -
  NB068_RS03830 - 771131..771610 (+) 480 WP_250314114.1 DUF302 domain-containing protein -
  NB068_RS03835 radA 771881..773260 (-) 1380 WP_012221465.1 DNA repair protein RadA Machinery gene
  NB068_RS03840 - 773288..773461 (+) 174 WP_250314115.1 hypothetical protein -
  NB068_RS03845 hemE 773449..774513 (-) 1065 WP_250314116.1 uroporphyrinogen decarboxylase -
  NB068_RS03850 - 774598..775806 (-) 1209 WP_250314117.1 heme biosynthesis protein HemY -
  NB068_RS03855 - 775803..777164 (-) 1362 WP_250314118.1 uroporphyrinogen-III C-methyltransferase -
  NB068_RS03860 - 777231..777953 (-) 723 WP_250314119.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49577.09 Da        Isoelectric Point: 7.3293

>NTDB_id=1153536 NB068_RS03835 WP_012221465.1 771881..773260(-) (radA) [Neisseria sp. Marseille-Q6792]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1153536 NB068_RS03835 WP_012221465.1 771881..773260(-) (radA) [Neisseria sp. Marseille-Q6792]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACCTCCCCGAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACACTTCAGGAAAGCTTAGCCGCGCCCGAGCCTAAAAACGCCCGATTCCAATCTTGGGCGGCAG
ACACTTCGACCGTTCAATCCCTCTCCGCCGTTACCGCCACCGAAGTGCCGCGCAATCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAGGAATCCGCCCAGCAGGTCGCCC
TGCGCGCGCAACGTTTGGAACTGCCCACCGAAGGTGTGAACCTGCTTGCCGAAATCCGTATGGAGGCGATTCAGACGGCC
TTGAAACAACACCAGCCCGAAGTTGTCGTCATCGACTCTATCCAAACCATGTATTCCGACCAAATCACGTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAATGTGCCGCCCAACTGACGCGTATGGCGAAACAAATGGGCATCGCTATGATTCTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGTTGGAGCATATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAGCATTCCAACTACCGCATGATACGCGCCATCAAAAACCGTTTCGGCGCGGCAAACGAATTGGGCGTGTTCGCGAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGTGACGATACGCCCGGCTCGT
GCGTTTTGGTTACACAGGAAGGCAGCCGACCGCTTTTGGTTGAAATTCAGGCATTGGTCGATGACGCACACGGCTTTACG
CCCAAACGCCTCACCGTCGGACTGGAACAAAACCGCCTTGCGATGCTGCTTGCCGTGTTAAACCGCCACGGCGGTATCGC
CTGTTTTGATCAGGATGTGTTTTTAAACGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCAGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCTATGCCTGAAAAAACCGTGGTTTTCGGCGAAATCGGACTAAGCGGAGAA
GTCCGCCCCGTCGCGCGCGGACAAGAGCGGCTCAAAGAGGCGGAAAAGCTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAACGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GCCGCGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.33

99.129

0.499
  radA Streptococcus mitis NCTC 12261

47.672

98.257

0.468
  radA Streptococcus pneumoniae Rx1

47.345

98.475

0.466
  radA Streptococcus pneumoniae D39

47.345

98.475

0.466
  radA Streptococcus pneumoniae R6

47.345

98.475

0.466
  radA Streptococcus pneumoniae TIGR4

47.345

98.475

0.466
  radA Streptococcus mitis SK321

47.228

98.257

0.464

Multiple sequence alignment