Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG27_RS07345 Genome accession   NZ_CP010121
Coordinates   1433706..1434221 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain C4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1428706..1439221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG27_RS07310 (RG27_06955) csrA 1429708..1429893 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  RG27_RS07330 (RG27_06975) yqaB 1430936..1431502 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG27_RS07335 (RG27_06980) yqaA 1431499..1431927 (+) 429 WP_001287454.1 YqaA family protein -
  RG27_RS07340 (RG27_06985) gshA 1432000..1433556 (+) 1557 WP_000611780.1 glutamate--cysteine ligase -
  RG27_RS07345 (RG27_06990) luxS 1433706..1434221 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  RG27_RS07350 (RG27_06995) emrB 1434285..1435823 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG27_RS07355 (RG27_07000) emrA 1435840..1437012 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RG27_RS07360 (RG27_07005) emrR 1437139..1437669 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RG27_RS07365 (RG27_07010) ygaH 1437760..1438095 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  RG27_RS07370 (RG27_07015) ygaZ 1438085..1438822 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=115352 RG27_RS07345 WP_001130211.1 1433706..1434221(+) (luxS) [Escherichia coli strain C4]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=115352 RG27_RS07345 WP_001130211.1 1433706..1434221(+) (luxS) [Escherichia coli strain C4]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGTGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAGCTGGCG
CTACCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment