Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LQ108_RS07950 Genome accession   NZ_OW968328
Coordinates   1676620..1677246 (+) Length   208 a.a.
NCBI ID   WP_150058017.1    Uniprot ID   -
Organism   Enterobacter cloacae isolate 1382     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1671620..1682246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ108_RS07930 (AI2999V1_1538) - 1672023..1673783 (-) 1761 WP_013097259.1 Lon protease family protein -
  LQ108_RS07935 (AI2999V1_1539) matP 1673970..1674422 (+) 453 WP_013097258.1 macrodomain Ter protein MatP -
  LQ108_RS07940 (AI2999V1_1540) ompA 1674486..1675538 (-) 1053 WP_118283100.1 porin OmpA -
  LQ108_RS07945 (AI2999V1_1541) sulA 1675893..1676402 (-) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  LQ108_RS07950 (AI2999V1_1542) sxy/tfoX 1676620..1677246 (+) 627 WP_150058017.1 TfoX/Sxy family DNA transformation protein Regulator
  LQ108_RS07955 (AI2999V1_1543) yccS 1677203..1679365 (-) 2163 WP_230134978.1 YccS family putative transporter -
  LQ108_RS07960 (AI2999V1_1544) - 1679385..1679831 (-) 447 WP_013097253.1 YccF domain-containing protein -
  LQ108_RS07965 (AI2999V1_1545) helD 1679954..1682008 (+) 2055 WP_230134980.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24060.67 Da        Isoelectric Point: 9.2254

>NTDB_id=1153448 LQ108_RS07950 WP_150058017.1 1676620..1677246(+) (sxy/tfoX) [Enterobacter cloacae isolate 1382]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRFSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1153448 LQ108_RS07950 WP_150058017.1 1676620..1677246(+) (sxy/tfoX) [Enterobacter cloacae isolate 1382]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACTCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AAGAAAGTGCGAAGTACTGTGTAAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGGCCGATCCTTCTTAAC
TATTATCGTGTGGATGACGGTCTCTGGCAGGACAGGGAGCGGCTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATACAGCGCTACCAGCGAAACCGGCTTAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTCCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTTCGGTCACTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAAAAT
AAAGCGCTCAGTATCAAAGTACTGTTTGCCCTGGAAGGGGCTATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAGAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTTCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567

Multiple sequence alignment