Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LQ159_RS14440 Genome accession   NZ_OW968124
Coordinates   2956978..2957607 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate 10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2951978..2962607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ159_RS14425 (AI2853V1_2798) helD 2952220..2954274 (-) 2055 WP_001295354.1 DNA helicase IV -
  LQ159_RS14430 (AI2853V1_2799) yccF 2954397..2954843 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LQ159_RS14435 (AI2853V1_2800) yccS 2954853..2957015 (+) 2163 WP_000875058.1 YccS family putative transporter -
  LQ159_RS14440 (AI2853V1_2801) sxy/tfoX 2956978..2957607 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LQ159_RS14445 (AI2853V1_2802) sulA 2957826..2958335 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LQ159_RS14450 (AI2853V1_2803) ompA 2958692..2959732 (+) 1041 WP_000750416.1 porin OmpA -
  LQ159_RS14455 (AI2853V1_2804) matP 2959808..2960260 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LQ159_RS14460 (AI2853V1_2805) ycbZ 2960446..2962206 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1153355 LQ159_RS14440 WP_000839153.1 2956978..2957607(-) (sxy/tfoX) [Escherichia coli isolate 10]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1153355 LQ159_RS14440 WP_000839153.1 2956978..2957607(-) (sxy/tfoX) [Escherichia coli isolate 10]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment