Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BAMY6614_RS14745 Genome accession   NZ_CP006960
Coordinates   3129771..3130571 (-) Length   266 a.a.
NCBI ID   WP_061862382.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3124771..3135571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS14715 (BAMY6614_15550) - 3125314..3125946 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  BAMY6614_RS20280 (BAMY6614_15560) - 3126243..3126380 (+) 138 WP_014470646.1 hypothetical protein -
  BAMY6614_RS14725 (BAMY6614_15565) - 3126474..3127592 (+) 1119 WP_032863662.1 NADH-dependent flavin oxidoreductase -
  BAMY6614_RS14730 (BAMY6614_15570) - 3127719..3127931 (+) 213 WP_029973891.1 spore germination protein -
  BAMY6614_RS14735 (BAMY6614_15575) - 3128057..3128269 (+) 213 WP_014418351.1 spore germination protein -
  BAMY6614_RS14740 (BAMY6614_15580) alr 3128444..3129625 (+) 1182 WP_021494302.1 alanine racemase -
  BAMY6614_RS14745 (BAMY6614_15585) spo0A 3129771..3130571 (-) 801 WP_061862382.1 sporulation transcription factor Spo0A Regulator
  BAMY6614_RS14750 (BAMY6614_15590) spoIVB 3130852..3132132 (-) 1281 WP_014418352.1 SpoIVB peptidase -
  BAMY6614_RS14755 (BAMY6614_15595) recN 3132296..3134026 (-) 1731 WP_007408359.1 DNA repair protein RecN Machinery gene
  BAMY6614_RS14760 (BAMY6614_15600) ahrC 3134058..3134507 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  BAMY6614_RS14765 (BAMY6614_15605) - 3134604..3135449 (-) 846 WP_061862383.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=115334 BAMY6614_RS14745 WP_061862382.1 3129771..3130571(-) (spo0A) [Bacillus amyloliquefaciens UMAF6614]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESEIEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=115334 BAMY6614_RS14745 WP_061862382.1 3129771..3130571(-) (spo0A) [Bacillus amyloliquefaciens UMAF6614]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGTGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGATCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATCTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAATTCAGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.255

100

0.966

Multiple sequence alignment