Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LQ120_RS14180 Genome accession   NZ_OW968111
Coordinates   2905085..2905714 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate 602     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2900085..2910714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ120_RS14165 (AI2860V1_2755) helD 2900327..2902381 (-) 2055 WP_000420533.1 DNA helicase IV -
  LQ120_RS14170 (AI2860V1_2756) yccF 2902504..2902950 (+) 447 WP_001261231.1 YccF domain-containing protein -
  LQ120_RS14175 (AI2860V1_2757) yccS 2902960..2905122 (+) 2163 WP_000875020.1 YccS family putative transporter -
  LQ120_RS14180 (AI2860V1_2758) sxy/tfoX 2905085..2905714 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LQ120_RS14185 (AI2860V1_2759) sulA 2905933..2906442 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LQ120_RS14190 (AI2860V1_2760) ompA 2906799..2907839 (+) 1041 WP_000750416.1 porin OmpA -
  LQ120_RS14195 (AI2860V1_2761) matP 2907915..2908367 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LQ120_RS14200 (AI2860V1_2762) ycbZ 2908553..2910313 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1153333 LQ120_RS14180 WP_000839153.1 2905085..2905714(-) (sxy/tfoX) [Escherichia coli isolate 602]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1153333 LQ120_RS14180 WP_000839153.1 2905085..2905714(-) (sxy/tfoX) [Escherichia coli isolate 602]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment