Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BAMY6614_RS10650 Genome accession   NZ_CP006960
Coordinates   2122424..2122708 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2117424..2127708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS10630 (BAMY6614_11245) - 2118667..2119575 (+) 909 WP_061862147.1 ketopantoate reductase family protein -
  BAMY6614_RS10635 (BAMY6614_11250) - 2119607..2120839 (-) 1233 WP_007409644.1 aminopeptidase -
  BAMY6614_RS20000 (BAMY6614_11255) - 2120940..2121074 (-) 135 WP_003154559.1 protein YkpC -
  BAMY6614_RS10640 (BAMY6614_11260) mreBH 2121146..2122153 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  BAMY6614_RS10650 (BAMY6614_11270) abrB 2122424..2122708 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BAMY6614_RS10655 (BAMY6614_11275) - 2122881..2124185 (+) 1305 WP_007409646.1 ATP-binding protein -
  BAMY6614_RS10660 (BAMY6614_11280) - 2124187..2125014 (+) 828 WP_061862148.1 gamma-glutamylcyclotransferase -
  BAMY6614_RS10665 (BAMY6614_11285) ktrC 2125055..2125720 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  BAMY6614_RS10670 (BAMY6614_11290) ade 2125869..2127602 (+) 1734 WP_029973685.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=115327 BAMY6614_RS10650 WP_003154557.1 2122424..2122708(+) (abrB) [Bacillus amyloliquefaciens UMAF6614]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=115327 BAMY6614_RS10650 WP_003154557.1 2122424..2122708(+) (abrB) [Bacillus amyloliquefaciens UMAF6614]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment