Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BAMY6614_RS10540 Genome accession   NZ_CP006960
Coordinates   2101930..2102526 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2096930..2107526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS10510 (BAMY6614_11120) - 2097144..2097599 (+) 456 WP_060561754.1 flavodoxin -
  BAMY6614_RS10515 (BAMY6614_11125) dapD 2097681..2098391 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BAMY6614_RS10520 (BAMY6614_11130) - 2098462..2099586 (+) 1125 WP_017417680.1 N-acetyldiaminopimelate deacetylase -
  BAMY6614_RS10525 (BAMY6614_11135) - 2099647..2099892 (+) 246 WP_003154596.1 YkuS family protein -
  BAMY6614_RS10530 (BAMY6614_11140) - 2099926..2100732 (-) 807 WP_021493755.1 mechanosensitive ion channel family protein -
  BAMY6614_RS10535 (BAMY6614_11145) - 2101020..2101478 (+) 459 WP_014417617.1 TlpA disulfide reductase family protein -
  BAMY6614_RS10540 (BAMY6614_11150) rok 2101930..2102526 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  BAMY6614_RS10545 (BAMY6614_11155) - 2102547..2103539 (-) 993 WP_014417619.1 hypothetical protein -
  BAMY6614_RS10550 (BAMY6614_11160) - 2103685..2104287 (+) 603 WP_014417620.1 molybdenum cofactor guanylyltransferase -
  BAMY6614_RS10555 (BAMY6614_11165) - 2104339..2105358 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  BAMY6614_RS10560 (BAMY6614_11170) glp 2105376..2106668 (+) 1293 WP_014417621.1 gephyrin-like molybdotransferase Glp -
  BAMY6614_RS10565 (BAMY6614_11175) mobB 2106629..2107150 (+) 522 WP_029973679.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=115326 BAMY6614_RS10540 WP_003154591.1 2101930..2102526(+) (rok) [Bacillus amyloliquefaciens UMAF6614]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=115326 BAMY6614_RS10540 WP_003154591.1 2101930..2102526(+) (rok) [Bacillus amyloliquefaciens UMAF6614]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCGGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment