Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BAMY6614_RS10435 Genome accession   NZ_CP006960
Coordinates   2086066..2086530 (-) Length   154 a.a.
NCBI ID   WP_014417605.1    Uniprot ID   I2C4C5
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2081066..2091530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS10420 (BAMY6614_11020) - 2081547..2083367 (+) 1821 WP_021493759.1 PAS domain-containing protein -
  BAMY6614_RS10425 (BAMY6614_11025) - 2083348..2084561 (-) 1214 Protein_2049 aminotransferase A -
  BAMY6614_RS20260 (BAMY6614_11030) - 2084762..2084923 (-) 162 WP_007409608.1 hypothetical protein -
  BAMY6614_RS10430 (BAMY6614_11035) cheV 2085112..2086023 (+) 912 WP_014417604.1 chemotaxis protein CheV -
  BAMY6614_RS10435 (BAMY6614_11040) kre 2086066..2086530 (-) 465 WP_014417605.1 YkyB family protein Regulator
  BAMY6614_RS10440 (BAMY6614_11045) - 2086653..2087945 (-) 1293 WP_014417606.1 MFS transporter -
  BAMY6614_RS10445 (BAMY6614_11050) - 2088021..2088515 (-) 495 WP_089072484.1 L,D-transpeptidase family protein -
  BAMY6614_RS10450 (BAMY6614_11055) - 2088590..2089453 (-) 864 WP_021493757.1 metallophosphoesterase -
  BAMY6614_RS10455 (BAMY6614_11060) fadH 2089597..2090361 (+) 765 WP_061862141.1 2,4-dienoyl-CoA reductase -
  BAMY6614_RS10460 (BAMY6614_11065) - 2090475..2091023 (+) 549 WP_014417610.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17812.60 Da        Isoelectric Point: 10.5497

>NTDB_id=115325 BAMY6614_RS10435 WP_014417605.1 2086066..2086530(-) (kre) [Bacillus amyloliquefaciens UMAF6614]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFRHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=115325 BAMY6614_RS10435 WP_014417605.1 2086066..2086530(-) (kre) [Bacillus amyloliquefaciens UMAF6614]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCGGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTAACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment