Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LQ127_RS15500 Genome accession   NZ_OW967966
Coordinates   3160642..3161271 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate 648     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3155642..3166271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ127_RS15485 (AI2858V1_3020) helD 3155884..3157938 (-) 2055 WP_022645482.1 DNA helicase IV -
  LQ127_RS15490 (AI2858V1_3021) yccF 3158061..3158507 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LQ127_RS15495 (AI2858V1_3022) yccS 3158517..3160679 (+) 2163 WP_000875041.1 YccS family putative transporter -
  LQ127_RS15500 (AI2858V1_3023) sxy/tfoX 3160642..3161271 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LQ127_RS15505 (AI2858V1_3024) sulA 3161490..3161999 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  LQ127_RS15510 (AI2858V1_3025) ompA 3162356..3163396 (+) 1041 WP_022645481.1 porin OmpA -
  LQ127_RS15515 (AI2858V1_3026) matP 3163473..3163925 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LQ127_RS15520 (AI2858V1_3027) ycbZ 3164111..3165871 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1153244 LQ127_RS15500 WP_000839153.1 3160642..3161271(-) (sxy/tfoX) [Escherichia coli isolate 648]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1153244 LQ127_RS15500 WP_000839153.1 3160642..3161271(-) (sxy/tfoX) [Escherichia coli isolate 648]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment