Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LQ147_RS14320 Genome accession   NZ_OW967802
Coordinates   2954492..2955121 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate 410     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2949492..2960121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ147_RS14305 (AI2843V1_2775) helD 2949734..2951788 (-) 2055 WP_000420536.1 DNA helicase IV -
  LQ147_RS14310 (AI2843V1_2776) yccF 2951911..2952357 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LQ147_RS14315 (AI2843V1_2777) yccS 2952367..2954529 (+) 2163 WP_000875023.1 YccS family putative transporter -
  LQ147_RS14320 (AI2843V1_2778) sxy/tfoX 2954492..2955121 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LQ147_RS14325 (AI2843V1_2779) sulA 2955340..2955849 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LQ147_RS14330 (AI2843V1_2780) ompA 2956206..2957258 (+) 1053 WP_001361736.1 porin OmpA -
  LQ147_RS14335 (AI2843V1_2781) matP 2957334..2957786 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LQ147_RS14340 (AI2843V1_2782) ycbZ 2957972..2959732 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1153152 LQ147_RS14320 WP_000839153.1 2954492..2955121(-) (sxy/tfoX) [Escherichia coli isolate 410]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1153152 LQ147_RS14320 WP_000839153.1 2954492..2955121(-) (sxy/tfoX) [Escherichia coli isolate 410]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment