Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LQ148_RS13875 Genome accession   NZ_OW967795
Coordinates   2852840..2853469 (-) Length   209 a.a.
NCBI ID   WP_001524444.1    Uniprot ID   -
Organism   Escherichia coli isolate 538     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2847840..2858469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ148_RS13860 (AI2890V1_2649) helD 2848082..2850136 (-) 2055 WP_001295938.1 DNA helicase IV -
  LQ148_RS13865 (AI2890V1_2650) yccF 2850259..2850705 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LQ148_RS13870 (AI2890V1_2651) yccS 2850715..2852877 (+) 2163 WP_000875041.1 YccS family putative transporter -
  LQ148_RS13875 (AI2890V1_2652) sxy/tfoX 2852840..2853469 (-) 630 WP_001524444.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LQ148_RS13880 (AI2890V1_2653) sulA 2853688..2854197 (+) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  LQ148_RS13885 (AI2890V1_2654) ompA 2854553..2855605 (+) 1053 WP_001346420.1 porin OmpA -
  LQ148_RS13890 (AI2890V1_2655) matP 2855682..2856134 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  LQ148_RS13895 (AI2890V1_2656) ycbZ 2856320..2858080 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24190.10 Da        Isoelectric Point: 9.0428

>NTDB_id=1153130 LQ148_RS13875 WP_001524444.1 2852840..2853469(-) (sxy/tfoX) [Escherichia coli isolate 538]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1153130 LQ148_RS13875 WP_001524444.1 2852840..2853469(-) (sxy/tfoX) [Escherichia coli isolate 538]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment