Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BAMY6614_RS05525 Genome accession   NZ_CP006960
Coordinates   1116393..1117346 (+) Length   317 a.a.
NCBI ID   WP_015239156.1    Uniprot ID   A0AAP3YGS2
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1111393..1122346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS05500 (BAMY6614_05770) - 1111436..1112863 (+) 1428 WP_089072406.1 sensor histidine kinase -
  BAMY6614_RS05505 (BAMY6614_05775) rapC 1113022..1114170 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  BAMY6614_RS05510 (BAMY6614_05780) phrC 1114154..1114273 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BAMY6614_RS05515 (BAMY6614_05790) - 1114425..1114535 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  BAMY6614_RS05520 (BAMY6614_05795) - 1114615..1115979 (-) 1365 WP_021495117.1 aspartate kinase -
  BAMY6614_RS05525 (BAMY6614_05800) ceuB 1116393..1117346 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  BAMY6614_RS05530 (BAMY6614_05805) - 1117336..1118283 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  BAMY6614_RS05535 (BAMY6614_05810) - 1118277..1119035 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -
  BAMY6614_RS05540 (BAMY6614_05815) - 1119057..1120001 (+) 945 WP_012116805.1 siderophore ABC transporter substrate-binding protein -
  BAMY6614_RS05545 (BAMY6614_05820) - 1120043..1121467 (-) 1425 WP_014416906.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.24 Da        Isoelectric Point: 9.6741

>NTDB_id=115307 BAMY6614_RS05525 WP_015239156.1 1116393..1117346(+) (ceuB) [Bacillus amyloliquefaciens UMAF6614]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=115307 BAMY6614_RS05525 WP_015239156.1 1116393..1117346(+) (ceuB) [Bacillus amyloliquefaciens UMAF6614]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTATTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAATTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536

Multiple sequence alignment