Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   RG26_RS22490 Genome accession   NZ_CP010119
Coordinates   4226819..4228246 (-) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain C3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4221819..4233246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG26_RS22465 (RG26_21215) yeeZ 4221874..4222698 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  RG26_RS22470 (RG26_21220) yeeY 4222744..4223673 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  RG26_RS30465 yoeI 4223888..4223950 (+) 63 WP_010723108.1 membrane protein YoeI -
  RG26_RS22475 (RG26_21225) plaP 4223940..4225298 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  RG26_RS22480 (RG26_21230) tsuA 4225477..4226535 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  RG26_RS22485 (RG26_21235) tsuB 4226549..4226776 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  RG26_RS22490 (RG26_21240) sbcB 4226819..4228246 (-) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  RG26_RS22495 (RG26_21245) dacD 4228455..4229621 (+) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  RG26_RS22500 (RG26_21250) sbmC 4229740..4230213 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  RG26_RS22505 (RG26_21255) yeeA 4230411..4231469 (+) 1059 WP_001200905.1 FUSC family protein -
  RG26_RS22510 (RG26_21260) tmaR 4231641..4231970 (+) 330 WP_000450409.1 DUF496 family protein -
  RG26_RS22515 (RG26_21265) - 4232071..4232253 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  RG26_RS29795 (RG26_21270) - 4232307..4232453 (+) 147 Protein_4078 transposase domain-containing protein -
  RG26_RS30470 (RG26_21275) - 4232742..4232822 (-) 81 Protein_4079 hypothetical protein -
  RG26_RS22525 (RG26_21280) yeeW 4232868..4233062 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=115304 RG26_RS22490 WP_000980570.1 4226819..4228246(-) (sbcB) [Escherichia coli strain C3]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=115304 RG26_RS22490 WP_000980570.1 4226819..4228246(-) (sbcB) [Escherichia coli strain C3]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment