Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LQ124_RS14705 Genome accession   NZ_OW967178
Coordinates   3040375..3041004 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate 362     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3035375..3046004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ124_RS14690 (AI2821V1_2831) helD 3035617..3037671 (-) 2055 WP_001314607.1 DNA helicase IV -
  LQ124_RS14695 (AI2821V1_2832) yccF 3037794..3038240 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LQ124_RS14700 (AI2821V1_2833) yccS 3038250..3040412 (+) 2163 WP_000875041.1 YccS family putative transporter -
  LQ124_RS14705 (AI2821V1_2834) sxy/tfoX 3040375..3041004 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LQ124_RS14710 (AI2821V1_2835) sulA 3041223..3041732 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  LQ124_RS14715 (AI2821V1_2836) ompA 3042089..3043141 (+) 1053 WP_000750418.1 porin OmpA -
  LQ124_RS14720 (AI2821V1_2837) matP 3043217..3043669 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LQ124_RS14725 (AI2821V1_2838) ycbZ 3043855..3045615 (+) 1761 WP_001589979.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1153035 LQ124_RS14705 WP_000839153.1 3040375..3041004(-) (sxy/tfoX) [Escherichia coli isolate 362]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1153035 LQ124_RS14705 WP_000839153.1 3040375..3041004(-) (sxy/tfoX) [Escherichia coli isolate 362]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment