Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LQ179_RS06610 Genome accession   NZ_OW967003
Coordinates   1309255..1309884 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate 624     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304255..1314884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ179_RS06595 (AI2834V1_1263) helD 1304497..1306551 (-) 2055 WP_022645482.1 DNA helicase IV -
  LQ179_RS06600 (AI2834V1_1264) yccF 1306674..1307120 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LQ179_RS06605 (AI2834V1_1265) yccS 1307130..1309292 (+) 2163 WP_000875041.1 YccS family putative transporter -
  LQ179_RS06610 (AI2834V1_1266) sxy/tfoX 1309255..1309884 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LQ179_RS06615 (AI2834V1_1267) sulA 1310103..1310612 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  LQ179_RS06620 (AI2834V1_1268) ompA 1310969..1312009 (+) 1041 WP_022645481.1 porin OmpA -
  LQ179_RS06625 (AI2834V1_1269) matP 1312086..1312538 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LQ179_RS06630 (AI2834V1_1270) ycbZ 1312724..1314484 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1153003 LQ179_RS06610 WP_000839153.1 1309255..1309884(-) (sxy/tfoX) [Escherichia coli isolate 624]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1153003 LQ179_RS06610 WP_000839153.1 1309255..1309884(-) (sxy/tfoX) [Escherichia coli isolate 624]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment