Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   BAMY6614_RS01700 Genome accession   NZ_CP006960
Coordinates   351873..353018 (+) Length   381 a.a.
NCBI ID   WP_014419129.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 346873..358018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS01680 (BAMY6614_01785) - 347347..348063 (-) 717 WP_007407631.1 Crp/Fnr family transcriptional regulator -
  BAMY6614_RS01685 (BAMY6614_01790) narK 348161..349351 (-) 1191 WP_061861632.1 nitrate transporter NarK -
  BAMY6614_RS01690 (BAMY6614_01795) argS 349486..351156 (-) 1671 WP_014419127.1 arginine--tRNA ligase -
  BAMY6614_RS01695 (BAMY6614_01800) - 351153..351581 (-) 429 WP_014419128.1 DUF1934 domain-containing protein -
  BAMY6614_RS01700 (BAMY6614_01810) rapF 351873..353018 (+) 1146 WP_014419129.1 tetratricopeptide repeat protein Regulator
  BAMY6614_RS01705 (BAMY6614_01815) phrF 353002..353121 (+) 120 WP_041482476.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BAMY6614_RS01710 (BAMY6614_01820) - 353319..353522 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  BAMY6614_RS01715 (BAMY6614_01825) - 353536..353739 (+) 204 WP_007407641.1 hypothetical protein -
  BAMY6614_RS01720 (BAMY6614_01830) - 353774..353959 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  BAMY6614_RS01725 (BAMY6614_01835) - 354146..354427 (+) 282 WP_007407643.1 hypothetical protein -
  BAMY6614_RS01730 (BAMY6614_01840) - 354471..354983 (+) 513 WP_007614439.1 stage II sporulation protein M -
  BAMY6614_RS01740 (BAMY6614_01850) - 355574..355792 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  BAMY6614_RS01745 (BAMY6614_01855) speB 355945..356817 (-) 873 WP_061861633.1 agmatinase -
  BAMY6614_RS01750 (BAMY6614_01860) speE 356876..357706 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45581.65 Da        Isoelectric Point: 4.5797

>NTDB_id=115292 BAMY6614_RS01700 WP_014419129.1 351873..353018(+) (rapF) [Bacillus amyloliquefaciens UMAF6614]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNTAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=115292 BAMY6614_RS01700 WP_014419129.1 351873..353018(+) (rapF) [Bacillus amyloliquefaciens UMAF6614]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATACGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.215

100

0.782
  rapC Bacillus subtilis subsp. subtilis str. 168

57.105

99.738

0.57

Multiple sequence alignment