Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LQ122_RS15390 Genome accession   NZ_OW849208
Coordinates   3106687..3107301 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii isolate 18     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3101687..3112301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ122_RS15375 (AI2668V1_2994) helD 3101911..3103965 (-) 2055 WP_054528243.1 DNA helicase IV -
  LQ122_RS15380 (AI2668V1_2995) - 3104091..3104537 (+) 447 WP_003035892.1 YccF domain-containing protein -
  LQ122_RS15385 (AI2668V1_2996) yccS 3104556..3106709 (+) 2154 WP_054528680.1 YccS family putative transporter -
  LQ122_RS15390 (AI2668V1_2997) sxy/tfoX 3106687..3107301 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  LQ122_RS15395 (AI2668V1_2998) sulA 3107519..3108028 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  LQ122_RS15400 (AI2668V1_2999) ompA 3108386..3109432 (+) 1047 WP_003035883.1 porin OmpA -
  LQ122_RS15405 (AI2668V1_3000) matP 3109521..3109973 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  LQ122_RS15410 (AI2668V1_3001) - 3110159..3111919 (+) 1761 WP_054528242.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=1152875 LQ122_RS15390 WP_003035889.1 3106687..3107301(-) (sxy/tfoX) [Citrobacter freundii isolate 18]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1152875 LQ122_RS15390 WP_003035889.1 3106687..3107301(-) (sxy/tfoX) [Citrobacter freundii isolate 18]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment