Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BAMY6614_RS00755 Genome accession   NZ_CP006960
Coordinates   166365..167054 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 161365..172054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS00720 (BAMY6614_00780) - 161563..162045 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BAMY6614_RS00725 (BAMY6614_00785) flgM 162060..162326 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAMY6614_RS00730 (BAMY6614_00790) - 162396..162815 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  BAMY6614_RS00735 (BAMY6614_00795) comFC 162889..163578 (-) 690 WP_202729384.1 phosphoribosyltransferase family protein Machinery gene
  BAMY6614_RS00740 (BAMY6614_00800) - 163584..163868 (-) 285 WP_045209016.1 late competence development ComFB family protein -
  BAMY6614_RS00745 (BAMY6614_00805) comFA 163926..165311 (-) 1386 WP_061861588.1 DEAD/DEAH box helicase Machinery gene
  BAMY6614_RS00750 (BAMY6614_00810) - 165419..166267 (-) 849 WP_003151387.1 DegV family protein -
  BAMY6614_RS00755 degU 166365..167054 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAMY6614_RS00760 (BAMY6614_00820) degS 167131..168294 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAMY6614_RS00765 (BAMY6614_00825) - 168517..169164 (+) 648 WP_007614107.1 YigZ family protein -
  BAMY6614_RS00770 (BAMY6614_00830) - 169169..170362 (+) 1194 WP_061861589.1 LCP family protein -
  BAMY6614_RS00775 (BAMY6614_00835) - 170461..171537 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=115287 BAMY6614_RS00755 WP_003219701.1 166365..167054(-) (degU) [Bacillus amyloliquefaciens UMAF6614]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=115287 BAMY6614_RS00755 WP_003219701.1 166365..167054(-) (degU) [Bacillus amyloliquefaciens UMAF6614]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCATGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGTA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment