Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LQ157_RS14515 Genome accession   NZ_OW848980
Coordinates   2957212..2957841 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate 23     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2952212..2962841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ157_RS14500 (AI2715V1_2803) helD 2952454..2954508 (-) 2055 WP_000420536.1 DNA helicase IV -
  LQ157_RS14505 (AI2715V1_2804) yccF 2954631..2955077 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LQ157_RS14510 (AI2715V1_2805) yccS 2955087..2957249 (+) 2163 WP_181204796.1 YccS family putative transporter -
  LQ157_RS14515 (AI2715V1_2806) sxy/tfoX 2957212..2957841 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LQ157_RS14520 (AI2715V1_2807) sulA 2958060..2958569 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LQ157_RS14525 (AI2715V1_2808) ompA 2958926..2959978 (+) 1053 WP_001361736.1 porin OmpA -
  LQ157_RS14530 (AI2715V1_2809) matP 2960054..2960506 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LQ157_RS14535 (AI2715V1_2810) ycbZ 2960692..2962452 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1152692 LQ157_RS14515 WP_000839153.1 2957212..2957841(-) (sxy/tfoX) [Escherichia coli isolate 23]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1152692 LQ157_RS14515 WP_000839153.1 2957212..2957841(-) (sxy/tfoX) [Escherichia coli isolate 23]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment