Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LQ087_RS15795 Genome accession   NZ_OW848788
Coordinates   3180749..3181363 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii isolate 112     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3175749..3186363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ087_RS15780 (AI2602V1_3088) helD 3175973..3178027 (-) 2055 WP_230122094.1 DNA helicase IV -
  LQ087_RS15785 (AI2602V1_3089) - 3178153..3178599 (+) 447 WP_003035892.1 YccF domain-containing protein -
  LQ087_RS15790 (AI2602V1_3090) yccS 3178618..3180771 (+) 2154 WP_230122095.1 YccS family putative transporter -
  LQ087_RS15795 (AI2602V1_3091) sxy/tfoX 3180749..3181363 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  LQ087_RS15800 (AI2602V1_3092) sulA 3181581..3182090 (+) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  LQ087_RS15805 (AI2602V1_3093) ompA 3182448..3183494 (+) 1047 WP_003035883.1 porin OmpA -
  LQ087_RS15810 (AI2602V1_3094) matP 3183583..3184035 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  LQ087_RS15815 (AI2602V1_3095) - 3184221..3185981 (+) 1761 WP_003035878.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=1152670 LQ087_RS15795 WP_003035889.1 3180749..3181363(-) (sxy/tfoX) [Citrobacter freundii isolate 112]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1152670 LQ087_RS15795 WP_003035889.1 3180749..3181363(-) (sxy/tfoX) [Citrobacter freundii isolate 112]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGTTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment