Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NBW44_RS07435 Genome accession   NZ_OW724079
Coordinates   1467644..1469008 (-) Length   454 a.a.
NCBI ID   WP_284346667.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1462644..1474008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS07410 abpA 1463482..1464132 (-) 651 WP_250307815.1 amylase-binding adhesin AbpA -
  NBW44_RS07415 - 1464287..1465255 (-) 969 WP_075565291.1 ribose-phosphate diphosphokinase -
  NBW44_RS07420 - 1465384..1466155 (-) 772 Protein_1434 PrsW family glutamic-type intramembrane protease -
  NBW44_RS07425 - 1466218..1466715 (-) 498 WP_250307816.1 carbonic anhydrase -
  NBW44_RS07430 - 1466875..1467573 (-) 699 WP_250307817.1 TIGR00266 family protein -
  NBW44_RS07435 radA 1467644..1469008 (-) 1365 WP_284346667.1 DNA repair protein RadA Machinery gene
  NBW44_RS07440 - 1469019..1469576 (-) 558 WP_250307819.1 histidine phosphatase family protein -
  NBW44_RS07445 - 1469536..1469979 (-) 444 WP_250307820.1 dUTP diphosphatase -
  NBW44_RS07455 tadA 1470164..1470631 (-) 468 WP_250307821.1 tRNA adenosine(34) deaminase TadA -
  NBW44_RS07460 - 1470832..1472118 (-) 1287 WP_250307991.1 adenylosuccinate synthase -
  NBW44_RS07465 comW 1472347..1472586 (-) 240 WP_250307822.1 sigma(X)-activator ComW -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49615.17 Da        Isoelectric Point: 6.5155

>NTDB_id=1152616 NBW44_RS07435 WP_284346667.1 1467644..1469008(-) (radA) [Streptococcus sp. Marseille-Q3533]
MIAKKKATFVCQNCEYNSPKYLGRCPNCGAWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGNIDSEFYLYAETNMQSVRAEV
ERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGE
RHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEI
RRVNRIEQRINEAAKLGFTKIYVPKNSLTGIKPPKEIQVVGVTTIQEVLKKVFS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1152616 NBW44_RS07435 WP_284346667.1 1467644..1469008(-) (radA) [Streptococcus sp. Marseille-Q3533]
ATTATCGCAAAGAAAAAAGCGACATTTGTGTGTCAAAATTGTGAATATAATTCACCAAAGTATTTAGGACGTTGCCCCAA
CTGTGGAGCTTGGTCTTCTTTTGTGGAGGAAGTTGAGGTTGCAGAGGTCAAAAATGCGCGTGTGTCCTTGACAGGTGAGA
AAACCAAGCCTATGAAATTGGCTGAAGTAACTTCTATTAATGTCAATCGGACCAAGACTGAGATGGAGGAATTCAACCGT
GTACTCGGTGGGGGTGTGGTACCAGGGAGTCTCGTCCTAATTGGTGGAGATCCAGGTATTGGAAAATCAACTCTTCTCTT
ACAAGTATCAACCCAGTTGTCTCAAGTAGGAACAGTCCTCTATGTCAGTGGTGAGGAGTCTGCTCAACAGATCAAACTCC
GTGCAGAGCGCTTGGGGAATATTGATAGCGAGTTTTATCTCTATGCTGAGACCAATATGCAGAGCGTGCGGGCAGAAGTG
GAGAGGATCCAGCCTGATTTTCTCATCATCGACTCTATACAGACAATTATGTCTCCTGAAATTTCTGGGGTGCAAGGGTC
AGTTTCTCAAGTACGAGAAGTGACGGCAGAGCTTATGCAGCTGGCTAAGACTAATAATATTGCCATCTTTATAGTCGGTC
ATGTGACCAAGGAAGGAACTTTGGCGGGACCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAGGGAGAA
CGCCACCATACCTTCCGTATCTTGAGAGCAGTCAAAAATCGTTTTGGCTCGACCAACGAGATTGGAATTTTTGAGATGCA
GTCAGGTGGATTGGTTGAAGTCCTTAATCCTAGTGAAGTATTTCTGGAAGAACGCTTGGATGGAGCGACTGGTTCGTCCA
TCGTTGTGACTATGGAAGGAACACGTCCAATTCTTGCTGAAGTGCAGGCTCTGGTGACACCGACTATGTTTGGAAATGCT
AAGCGTACGACGACAGGGCTTGATTTCAATCGCGCTAGCTTGATTATGGCTGTTTTGGAGAAACGGGCAGGTCTCTTGCT
TCAAAATCAGGATGCCTATCTTAAATCAGCTGGTGGTGTCAAATTAGATGAACCTGCTATTGACCTGGCTGTTGCAGTTG
CTATTGCTTCTAGCTACAAGGACAAACCAACCAATCCCCAAGAATGTTTTGTGGGAGAGCTGGGCTTGACGGGAGAGATT
CGGCGCGTAAATCGTATCGAACAACGGATCAATGAAGCTGCTAAGCTTGGATTTACAAAAATCTATGTGCCAAAAAATTC
CCTAACAGGCATAAAGCCACCTAAGGAAATTCAGGTGGTTGGAGTGACGACTATTCAGGAAGTCTTGAAAAAGGTATTCT
CCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(361-426)

AAA domain (AAA_25)

(64-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

98.013

99.78

0.978
  radA Streptococcus mitis SK321

98.013

99.78

0.978
  radA Streptococcus pneumoniae Rx1

98.013

99.78

0.978
  radA Streptococcus pneumoniae D39

98.013

99.78

0.978
  radA Streptococcus pneumoniae R6

98.013

99.78

0.978
  radA Streptococcus pneumoniae TIGR4

98.013

99.78

0.978
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.78

0.626

Multiple sequence alignment