Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NBW44_RS06880 Genome accession   NZ_OW724079
Coordinates   1351864..1353624 (-) Length   586 a.a.
NCBI ID   WP_250307730.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1346864..1358624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS06840 - 1347000..1347194 (-) 195 WP_250307726.1 hypothetical protein -
  NBW44_RS06845 - 1347191..1347382 (-) 192 WP_250307727.1 hypothetical protein -
  NBW44_RS06850 - 1347523..1349187 (-) 1665 WP_006152972.1 DAK2 domain-containing protein -
  NBW44_RS06855 - 1349190..1349555 (-) 366 WP_075565532.1 Asp23/Gls24 family envelope stress response protein -
  NBW44_RS06860 rpmB 1349709..1349897 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  NBW44_RS06865 - 1350003..1350677 (-) 675 WP_250307728.1 hypothetical protein -
  NBW44_RS06870 - 1350682..1351128 (-) 447 WP_006155797.1 LytTR family DNA-binding domain-containing protein -
  NBW44_RS06875 - 1351247..1351750 (-) 504 WP_250307729.1 phosphatase PAP2 family protein -
  NBW44_RS06880 rcrQ 1351864..1353624 (-) 1761 WP_250307730.1 ABC transporter ATP-binding protein Regulator
  NBW44_RS06885 rcrP 1353614..1355383 (-) 1770 WP_250307731.1 ABC transporter ATP-binding protein Regulator
  NBW44_RS06890 - 1355367..1355828 (-) 462 WP_250307732.1 MarR family winged helix-turn-helix transcriptional regulator -
  NBW44_RS06895 - 1356037..1356720 (+) 684 WP_250307733.1 hypothetical protein -
  NBW44_RS06900 - 1356765..1357481 (-) 717 WP_061863664.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64675.61 Da        Isoelectric Point: 5.0360

>NTDB_id=1152612 NBW44_RS06880 WP_250307730.1 1351864..1353624(-) (rcrQ) [Streptococcus sp. Marseille-Q3533]
MENKKMSLWKQCSPFLAGLQLPLLIAVVAAICSSIITVYGPTKIKEITNLISDGLMTKIDLEAVSSIASFLVILYVLGII
LNYTQAYIFSTSIQHFSKRLRTAIAEKINRLPLAYFDRYSQGDILSRVTNDVDTAAQSLNQGLGTVLSASFLLIAVLITM
FGMNWILALVTVVSTLVGFTAVSVIMAKSQGYFKAQQNNLAAVNGYVEEMYSGHNVVTSYNAVEPTKDTFAVLNQNLHDS
IWKSQFISGIMMPAMVFVGNFSYVLVIIVGAALALEGYISIGIIVAFMVYVRTFSQPLSQIAQGITSLQQASAAMTRVFE
FLGEEEMEDESHKERQLTNMKGEVVFDRVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKAMKRSEVHDAFSMVLQDTWLFEGTIRNNLIYNQTGISDERVIEAAKAVGIHHFITTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDALLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKEGNIIEQGN
HEELMAQGGFYADLYNSQFTEDQAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=1152612 NBW44_RS06880 WP_250307730.1 1351864..1353624(-) (rcrQ) [Streptococcus sp. Marseille-Q3533]
ATGGAAAATAAGAAAATGTCCTTATGGAAACAGTGTAGCCCTTTTCTAGCAGGTCTCCAACTTCCCCTACTAATCGCAGT
TGTGGCGGCTATATGTTCAAGTATTATCACGGTTTATGGACCAACTAAGATCAAAGAAATTACCAATTTGATTTCAGATG
GGTTAATGACAAAGATTGACCTAGAGGCTGTCTCAAGTATTGCTAGTTTTTTGGTTATCCTCTATGTGCTTGGGATTATC
CTGAACTATACGCAAGCCTACATTTTTTCAACTAGTATCCAACATTTCTCAAAACGTTTGCGGACAGCTATTGCTGAGAA
AATCAATCGCTTGCCACTTGCTTATTTTGACCGTTATTCTCAAGGGGACATCCTTTCTCGTGTGACTAATGATGTTGATA
CAGCAGCTCAGTCTCTTAACCAAGGCCTTGGGACAGTTCTTTCAGCTAGCTTTTTACTGATTGCTGTTTTGATTACCATG
TTTGGTATGAACTGGATTTTGGCACTGGTAACCGTTGTTTCAACCCTTGTTGGATTTACGGCGGTTTCCGTAATTATGGC
CAAGTCGCAGGGCTACTTTAAAGCTCAACAAAATAACCTAGCAGCTGTAAATGGCTATGTGGAAGAAATGTACTCTGGCC
ACAATGTGGTGACCAGCTATAATGCTGTGGAACCAACAAAAGATACATTTGCAGTTTTGAATCAGAATCTACATGATAGC
ATCTGGAAATCTCAGTTTATCTCTGGAATTATGATGCCTGCCATGGTCTTTGTAGGCAACTTTAGTTATGTTTTAGTCAT
TATCGTCGGTGCTGCCTTGGCTCTTGAAGGGTATATCAGTATCGGGATTATTGTAGCCTTCATGGTTTATGTTCGAACCT
TCTCGCAACCCTTATCACAGATTGCCCAAGGAATTACCAGCTTACAACAAGCTAGTGCAGCCATGACTCGTGTCTTCGAA
TTTCTAGGTGAAGAGGAAATGGAAGATGAATCTCATAAGGAAAGACAATTGACCAACATGAAGGGTGAAGTGGTCTTTGA
CAGAGTTTCATTTGGCTACACACCGGAGCGAACGATCATTCATGACTTTTCTGCGACAGCTCATGCAGGTCAAAAGGTCG
CGATTGTCGGACCAACTGGTGCTGGGAAGACGACTATTGTTAATCTCTTGATGAAGTTCTATGAGATTGATAAGGGAAGT
ATTCGCATTGATGGTGTGGATACCAAGGCTATGAAGCGCTCAGAAGTACACGATGCTTTTTCAATGGTCTTGCAGGATAC
CTGGCTCTTTGAAGGAACCATTCGTAACAATCTCATCTATAATCAAACAGGTATCAGTGATGAACGTGTGATTGAAGCTG
CCAAAGCAGTAGGGATCCACCACTTTATCACAACCTTACCTGATGGATACGATACTGTTTTGGATGATACAGTGACCTTG
TCAGTCGGGCAGAAACAACTCTTGACCATTGCTCGTGCTCTGCTCAAGGATGCTCTGCTCTTGATTCTGGACGAAGCAAC
ATCCTCAGTCGATACTCGTACGGAGGAGTTGATTCAAAAGGCTATGGACCGTTTGATGGAGGGACGCACATCCTTTGTCA
TCGCCCACCGTTTGTCAACGATCCGCAATGCTGACTTGATTCTGGTCATGAAAGAAGGAAACATCATCGAGCAAGGCAAT
CATGAAGAGCTTATGGCTCAGGGTGGTTTCTATGCAGACCTCTACAATAGTCAATTTACAGAAGACCAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.61

99.659

0.664

Multiple sequence alignment