Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   NBW44_RS00660 Genome accession   NZ_OW724079
Coordinates   112121..112852 (+) Length   243 a.a.
NCBI ID   WP_250306787.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 107121..117852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS00635 - 108565..109197 (+) 633 WP_006151561.1 DJ-1/PfpI family protein -
  NBW44_RS00640 dnaJ 109396..110532 (+) 1137 WP_250306784.1 molecular chaperone DnaJ -
  NBW44_RS00645 - 110610..111263 (-) 654 WP_250307969.1 hypothetical protein -
  NBW44_RS00650 - 111349..111633 (-) 285 WP_250306785.1 hypothetical protein -
  NBW44_RS00655 - 111643..112053 (-) 411 WP_250306786.1 HIT family protein -
  NBW44_RS00660 pptA 112121..112852 (+) 732 WP_250306787.1 ABC transporter ATP-binding protein Regulator
  NBW44_RS00665 - 112849..113898 (+) 1050 WP_250306788.1 ABC transporter permease -
  NBW44_RS00670 - 113946..114740 (+) 795 WP_075566336.1 cell cycle regulator CcrZ -
  NBW44_RS00675 trmB 114737..115372 (+) 636 WP_142558371.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NBW44_RS00680 rimP 115491..115979 (+) 489 WP_250306789.1 ribosome maturation factor RimP -
  NBW44_RS00685 nusA 116022..117158 (+) 1137 WP_075566347.1 transcription termination factor NusA -
  NBW44_RS00690 - 117179..117472 (+) 294 WP_075566349.1 YlxR family protein -
  NBW44_RS00695 - 117465..117764 (+) 300 WP_075566351.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27308.73 Da        Isoelectric Point: 4.7270

>NTDB_id=1152576 NBW44_RS00660 WP_250306787.1 112121..112852(+) (pptA) [Streptococcus sp. Marseille-Q3533]
MLEIKNLTGGYVHVPVLKDVSFTVESGKLVGLIGLNGAGKSTTINEIIGLLTPYSGEINIDGLTLRANPREYRQQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQEQAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLDEEKKKGKSILMSTHVLDSAEKMCDSFVILHKGQVRAKGDLPQLRQAFDMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1152576 NBW44_RS00660 WP_250306787.1 112121..112852(+) (pptA) [Streptococcus sp. Marseille-Q3533]
ATGTTAGAAATAAAAAACCTGACAGGAGGCTATGTTCACGTCCCTGTCTTAAAGGATGTATCTTTTACAGTTGAAAGTGG
GAAATTGGTTGGTTTGATTGGACTAAATGGTGCTGGTAAATCAACTACAATTAACGAAATTATTGGACTTTTGACACCTT
ATAGTGGGGAAATCAATATCGATGGCTTGACCTTACGAGCTAATCCTCGTGAATACCGTCAGCAAATTGGTTATATCCCT
GAAACACCTAGTTTATATGAGGAGTTAACTCTTAGAGAACATATTGAGACGGTTGCCATGGCCTATGGTATCGAGCAAGA
ACAAGCTTTTGAACGAGTAGAACCTCTTTTGAAGATGTTTCGTTTGGATCAGAAATTAGATTGGTTCCCAGTTCATTTTT
CTAAGGGAATGAAACAGAAGGTCATGATTATCTGTGCCTTTGTTGTAGATCCTAGTCTTTTTATAGTAGACGAGCCATTC
CTAGGTCTAGATCCTTTGGCAATTTCGGATTTAATTCAGCTTTTAGACGAGGAAAAGAAAAAGGGGAAATCGATTCTCAT
GAGTACCCATGTTCTTGATTCTGCAGAAAAAATGTGTGACTCTTTTGTAATTTTACATAAGGGACAAGTAAGAGCTAAAG
GAGATCTTCCTCAACTACGCCAAGCTTTTGATATGCCAGAAGCAAGTCTCAATGATATCTATTTGGCCTTAACTAAAGAG
GAGGAACTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.274

99.177

0.737
  pptA Streptococcus thermophilus LMD-9

73.444

99.177

0.728

Multiple sequence alignment