Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NMG63_RS01855 Genome accession   NZ_OW659496
Coordinates   398559..400358 (+) Length   599 a.a.
NCBI ID   WP_254007293.1    Uniprot ID   -
Organism   Erysipelothrix amsterdamensis strain A18Y020d     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 393559..405358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG63_RS01830 (ERYAMS_00369) gatB 394769..396184 (+) 1416 WP_254007290.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  NMG63_RS01835 (ERYAMS_00370) - 396223..396900 (+) 678 WP_254007291.1 hypothetical protein -
  NMG63_RS01840 (ERYAMS_00371) - 396990..398198 (+) 1209 WP_254007292.1 O-antigen ligase -
  NMG63_RS01855 (ERYAMS_00374) pepF 398559..400358 (+) 1800 WP_254007293.1 oligoendopeptidase F Regulator
  NMG63_RS01860 (ERYAMS_00375) - 400415..400807 (-) 393 WP_254007294.1 CoA-binding protein -
  NMG63_RS01865 (ERYAMS_00376) - 400804..401406 (-) 603 WP_254007295.1 alpha/beta hydrolase -
  NMG63_RS01870 (ERYAMS_00377) - 401477..403354 (-) 1878 WP_254007296.1 BglG family transcription antiterminator -
  NMG63_RS01875 (ERYAMS_00378) - 403419..404237 (-) 819 WP_254007297.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  NMG63_RS01880 (ERYAMS_00379) - 404230..405000 (-) 771 WP_254007298.1 PTS sugar transporter subunit IIC -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68578.32 Da        Isoelectric Point: 4.3644

>NTDB_id=1152401 NMG63_RS01855 WP_254007293.1 398559..400358(+) (pepF) [Erysipelothrix amsterdamensis strain A18Y020d]
MSDKYELPLRSEVDIKDTWDLTPMFKDDDAWNTEFDAIQNDLSEVAAYRGTLTKSAESLLAGLKFRDELSYRIEFLYVYA
HLSFDVDTTNPKYQAMNARVQSLLAQFGSSFSFYEAEILSADEAVIREYLESNDALSLYNHEFDRLFKSRPHILSEKEER
ILASSGEIFGVSSQTFGMLNNADIQFPTIKDESGNDVQLSHGRYSLLMESADRRVREDAFKAMQTTYGNLKNTLASTLSG
NVKVHNFNATIRNYASARQAALAANNIDEEVYDSLLEGIHNNINLLHDYVALREEALGIDDIQMYDIYVPMVDEVDLKFT
YEEAQEVILDALSVLGEEYCAVLKRAFDERWIDVVENKGKRSGAYSSGTYGSAPYILLNWQENIDNVFTLAHELGHSVHS
YFTRKYQPYIYGDYSIFVAEVASTTNENLLLNYLLDQYEDPKVRAYLLNHYLDTVKGTVFRQTQFAEFEHLIHKSDQEGV
ALTADYLIESYYKLNQFYYGESISTEEIGYEWARIPHFYYNYYVYQYATGFSAATLFSETIYNGGDATPYLDFLKSGSSD
YPINVLRKAGVDMTESTAVDTTLEKFGERMAELRTLLVK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=1152401 NMG63_RS01855 WP_254007293.1 398559..400358(+) (pepF) [Erysipelothrix amsterdamensis strain A18Y020d]
ATGTCGGATAAATATGAATTACCACTTCGTAGTGAAGTGGATATAAAAGATACATGGGATTTAACACCGATGTTTAAAGA
TGATGACGCATGGAATACAGAATTTGATGCGATTCAAAATGACTTAAGTGAAGTGGCTGCATATCGTGGTACTTTAACGA
AAAGTGCTGAGAGTTTGTTAGCGGGTCTTAAGTTTCGTGATGAATTAAGTTATCGTATTGAGTTTTTATATGTTTATGCA
CATTTAAGTTTTGATGTCGATACCACAAACCCTAAGTATCAAGCTATGAATGCGCGCGTGCAATCGCTTCTTGCGCAATT
TGGATCGAGTTTTTCGTTCTACGAAGCAGAAATTTTATCTGCGGATGAAGCTGTGATACGGGAATATCTTGAATCGAATG
ATGCACTCAGTTTATATAATCATGAGTTTGATCGTCTTTTCAAATCAAGACCACATATTCTTAGTGAAAAAGAAGAACGT
ATTCTTGCCTCATCAGGAGAAATCTTTGGTGTTTCTTCGCAGACATTTGGTATGTTGAATAATGCAGATATTCAATTTCC
TACAATTAAAGATGAATCTGGAAATGATGTTCAATTATCACATGGACGTTATTCACTATTAATGGAAAGTGCAGATCGAC
GTGTTCGTGAAGATGCTTTCAAAGCGATGCAAACAACCTATGGTAATTTAAAGAATACGCTCGCAAGTACGCTGTCGGGA
AATGTTAAGGTTCATAATTTCAATGCAACAATCCGTAATTATGCATCGGCACGCCAGGCTGCTCTTGCTGCGAATAATAT
TGACGAAGAAGTTTATGATTCTTTATTAGAAGGAATCCATAATAATATCAATTTATTGCATGATTATGTTGCACTTCGTG
AAGAAGCCTTGGGTATTGATGATATTCAAATGTATGATATCTATGTTCCTATGGTTGATGAAGTGGATTTGAAGTTTACG
TATGAAGAAGCGCAAGAAGTGATCTTAGATGCATTGAGTGTTCTTGGAGAAGAATATTGTGCTGTATTGAAACGTGCATT
TGATGAACGTTGGATTGATGTTGTTGAGAATAAAGGAAAACGTTCGGGTGCTTATTCTTCAGGTACTTATGGAAGTGCAC
CGTACATTCTTTTAAACTGGCAAGAAAATATTGATAATGTGTTTACACTTGCTCATGAACTTGGCCATAGTGTTCACTCA
TACTTTACACGTAAGTATCAACCTTATATTTATGGGGATTACTCTATTTTTGTTGCTGAGGTAGCTTCAACGACGAATGA
GAATTTATTGTTGAATTACTTGTTGGATCAATATGAGGATCCTAAGGTTCGTGCTTACTTGTTGAATCATTATTTAGACA
CGGTTAAGGGCACGGTGTTCCGTCAAACACAGTTTGCTGAGTTTGAACACCTTATTCATAAATCAGACCAAGAGGGCGTT
GCTTTAACGGCTGATTATTTAATTGAATCTTACTACAAACTTAATCAATTCTATTATGGTGAATCAATCAGCACCGAAGA
AATTGGTTATGAGTGGGCACGCATCCCTCATTTCTACTATAATTACTATGTTTACCAATATGCTACAGGGTTTAGCGCAG
CAACTTTATTCAGTGAAACAATTTATAATGGTGGTGATGCGACACCTTATCTTGATTTCTTGAAGTCAGGAAGTTCTGAC
TATCCAATTAATGTCCTTCGTAAGGCGGGCGTGGATATGACTGAATCAACAGCAGTTGATACAACACTCGAGAAATTTGG
CGAACGTATGGCTGAATTACGAACACTACTTGTAAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(206-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.241

98.998

0.487

Multiple sequence alignment