Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   OC536_RS16170 Genome accession   NZ_OW443151
Coordinates   394111..396171 (+) Length   686 a.a.
NCBI ID   WP_080284714.1    Uniprot ID   -
Organism   Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 389111..401171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC536_RS16160 (CNRVC190247_03206) - 389832..390971 (+) 1140 WP_000670241.1 exonuclease SbcCD subunit D -
  OC536_RS16165 (CNRVC190247_03207) - 390973..394014 (+) 3042 WP_032477092.1 AAA family ATPase -
  OC536_RS16170 (CNRVC190247_03208) cqsS 394111..396171 (+) 2061 WP_080284714.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  OC536_RS16175 (CNRVC190247_03209) cqsA 396274..397443 (-) 1170 WP_262102104.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OC536_RS16180 (CNRVC190247_03210) - 397640..398602 (-) 963 WP_032477094.1 TDT family transporter -
  OC536_RS16185 (CNRVC190247_03211) clcA 398749..400155 (-) 1407 WP_000107458.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78595.44 Da        Isoelectric Point: 5.5032

>NTDB_id=1152368 OC536_RS16170 WP_080284714.1 394111..396171(+) (cqsS) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MIVSMDVIKRVYQYAEPNLFLVGWMGMLGFPAYYFIWEYWFPQSYENLGLRCAAAVLFGGLVFRDSMPKKWQRYMPGYFL
FTIGFCLPFFFAFMMLMNDWSTIWAMSFMASIFLHILLVHDTRVMALQALFSVLVAYLAVYGLTDFHPTTLIEWQYIPIF
LFTYVFGNLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILN
EADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQPFDFFGSDTLLTYALFN
LLKNAFYYQKEHFSVRISIEQTREHNLIRVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMSAFGGTIRCAS
QQGQWTEFVLSFPRYDSDTVNEIKTELLKTKSLIYIGSNQAIVRELNQLAVEDEFGFTAISAQQAVRRQDYEFEFDLILL
DLDDTTAQGELLPKLEGTLSFAEGCIGYVYDPGKTYAVNINRYLRIQPISIHSILRKPRKIIERLLFEQESLSMNRNVIP
LQKSRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRDSEHEY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=1152368 OC536_RS16170 WP_080284714.1 394111..396171(+) (cqsS) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
GTGATAGTGAGCATGGATGTAATAAAGAGAGTGTATCAATACGCAGAACCTAATCTGTTCTTAGTCGGATGGATGGGCAT
GCTTGGCTTTCCTGCCTACTACTTCATCTGGGAATATTGGTTTCCGCAATCTTACGAAAATTTAGGGCTGCGCTGTGCGG
CAGCAGTGCTGTTTGGTGGGCTGGTGTTTCGTGATTCGATGCCTAAGAAATGGCAGCGGTATATGCCGGGCTATTTTCTA
TTCACCATAGGTTTCTGCTTACCCTTTTTCTTCGCTTTTATGATGTTAATGAACGACTGGTCGACAATTTGGGCCATGTC
GTTTATGGCGTCCATTTTTCTGCATATTCTCTTAGTGCACGATACGAGAGTGATGGCGTTACAAGCTCTTTTCTCCGTGT
TGGTGGCCTATCTTGCGGTATATGGTTTGACGGATTTTCACCCGACGACTTTGATTGAATGGCAATACATACCGATCTTT
TTGTTTACTTATGTATTTGGGAATTTATGTTTTTTCCGTAACCAAATTTCTCATGAGACCAAAGTGTCGATTGCCAAAAC
GTTCGGAGCGGGGATTGCCCATGAAATGCGTAATCCACTCAGCGCTTTGAAAACGTCGATTGATGTTGTGCGAACCATGA
TCCCTAAACCGCAAACTGCAGCTCATACGGATTATTCCTTGGATGCGCAAGAGCTGGATCTGCTGCATCAAATTTTGAAT
GAAGCTGATGATGTCATCTACTCTGGCAATAACGCGATTGATTTGCTGCTCACCTCGATTGATGAAAACCGCGTCTCTCC
GGCGAGTTTTAAAAAACACTCCGTAGTGGATGTGATTGAAAAAGCGGTGAAAACTTTTCCGTATAAAAATGCAGCGGACC
AGCACTCGGTAGAGCTTGAAGTGCATCAGCCGTTTGACTTTTTTGGCAGTGATACTCTACTGACTTATGCGCTATTTAAC
CTGTTGAAAAATGCCTTTTATTATCAAAAAGAGCATTTTTCAGTTCGTATTTCCATTGAACAAACCCGTGAGCATAACCT
TATTCGAGTCCGTGATAACGGCGTGGGGATTGCGCCAGAGATGTTGGAAGACATTTTCCGTGATTTCTATACCTTCGGTA
AAAATGGCAGCTATGGGCTAGGATTGCCATTTTGCCGCAAAGTGATGTCCGCATTTGGGGGGACGATTCGCTGTGCGTCT
CAACAAGGTCAATGGACAGAATTCGTATTGAGCTTTCCTCGTTACGATTCCGATACGGTTAACGAGATAAAAACAGAACT
GCTGAAAACCAAATCGCTCATTTATATCGGCTCAAATCAAGCTATCGTTCGAGAGTTAAATCAGCTCGCAGTAGAAGATG
AGTTTGGTTTTACCGCTATTTCTGCGCAGCAAGCAGTAAGACGCCAAGATTATGAGTTTGAGTTCGACCTTATTTTGCTC
GACCTTGATGACACTACGGCGCAGGGAGAACTACTGCCGAAACTTGAAGGGACATTGAGTTTTGCAGAAGGCTGTATCGG
CTATGTGTATGACCCGGGTAAAACGTACGCGGTAAACATTAACCGTTATCTGCGTATCCAACCGATCAGTATTCACTCTA
TTCTCAGAAAGCCGCGGAAAATCATCGAACGCTTGTTGTTTGAGCAAGAATCCTTATCGATGAATCGTAACGTGATCCCC
TTGCAAAAGAGTCGGCATGAACGACGTATTTTGGTGGTTGATGATAATCAATCGATCCGAACTTTTACGGCTATTTTGCT
TGAGCAACAAGGTTATGAAGTGGTGCAAGCCAACGATGGTAGTGAAGTGCTCAAGCATATGGAGAGTCAAAACATCGATT
TAGTGTTGATGGACATTGAAATGCCGAATGTCGGGGGATTAGAAGCGACGCGTTTAATTCGCGACTCTGAGCATGAATAT
AAAAATATTCCGATCATTGGTTACACTGGTGATAACAGCCCCAAAACCTTGGCTCTGGTACAAACCTCAGGCATGAATGA
TTTCATTGTGAAGCCTGCTGACCGTGATGTATTGCTAAATAAAGTGGCAGCTTGGGTGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(570-682)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

99.271

100

0.993

Multiple sequence alignment