Detailed information NTG1152357

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OC536_RS11800
• Genome accession: NZ_OW443150
• Coordinates: 2611290..2612297 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116733.1
• Uniprot ID: A0AAW4H1Y0
• Organism: Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2606290..2617297

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OC536_RS11790 (CNRVC190247_02376)	cysM	2607453..2608340 (+)	888	WP_001279364.1	cysteine synthase CysM	-
OC536_RS11795 (CNRVC190247_02377)	mutS	2608608..2611196 (+)	2589	WP_032477068.1	DNA mismatch repair protein MutS	-
OC536_RS11800 (CNRVC190247_02378)	rpoS	2611290..2612297 (-)	1008	WP_000116733.1	RNA polymerase sigma factor RpoS	Regulator
OC536_RS11805 (CNRVC190247_02379)	-	2612371..2613306 (-)	936	WP_032477066.1	peptidoglycan DD-metalloendopeptidase family protein	-
OC536_RS11810 (CNRVC190247_02380)	-	2613306..2613932 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OC536_RS11815 (CNRVC190247_02381)	surE	2613925..2614677 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
OC536_RS11820 (CNRVC190247_02382)	truD	2614679..2615764 (-)	1086	WP_032477064.1	tRNA pseudouridine(13) synthase TruD	-
OC536_RS11825 (CNRVC190247_02383)	ispF	2615794..2616270 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OC536_RS11830 (CNRVC190247_02384)	ispD	2616267..2616965 (-)	699	WP_001061953.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OC536_RS11835 (CNRVC190247_02385)	ftsB	2616962..2617246 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38476.31 Da
• Isoelectric Point: 4.3648

>NTDB_id=1152357 OC536_RS11800 WP_000116733.1 2611290..2612297(-) (rpoS) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDAREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=1152357 OC536_RS11800 WP_000116733.1 2611290..2612297(-) (rpoS) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGATGCTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGCCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACCGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGCGATGAAGCCGCACGCAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAGGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCTATCCATGTCGTCAAAGAGCTGAATATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994