Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OC536_RS11660 Genome accession   NZ_OW443150
Coordinates   2584809..2585327 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2579809..2590327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC536_RS11635 (CNRVC190247_02344) rimM 2579918..2580472 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  OC536_RS11640 (CNRVC190247_02345) rpsP 2580500..2580748 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  OC536_RS11645 (CNRVC190247_02346) ffh 2580984..2582369 (-) 1386 WP_032476927.1 signal recognition particle protein -
  OC536_RS11650 (CNRVC190247_02348) - 2582582..2583376 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  OC536_RS11655 (CNRVC190247_02349) - 2583459..2584739 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  OC536_RS11660 (CNRVC190247_02350) luxS 2584809..2585327 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  OC536_RS11665 (CNRVC190247_02351) gshA 2585376..2586950 (-) 1575 WP_000032616.1 glutamate--cysteine ligase -
  OC536_RS11670 (CNRVC190247_02352) - 2587062..2589917 (-) 2856 WP_032476926.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=1152354 OC536_RS11660 WP_001130227.1 2584809..2585327(-) (luxS) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1152354 OC536_RS11660 WP_001130227.1 2584809..2585327(-) (luxS) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGTAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCTATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGTATTTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment