Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OC536_RS08290 Genome accession   NZ_OW443150
Coordinates   1835220..1836644 (+) Length   474 a.a.
NCBI ID   WP_262102068.1    Uniprot ID   -
Organism   Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1830220..1841644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC536_RS08270 (CNRVC190247_01667) - 1830488..1831273 (-) 786 WP_000718973.1 adenosylcobinamide-GDP ribazoletransferase -
  OC536_RS08275 (CNRVC190247_01668) cobT 1831273..1832298 (-) 1026 WP_000887075.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  OC536_RS08280 (CNRVC190247_01669) msrB 1832909..1833355 (-) 447 WP_032476236.1 peptide-methionine (R)-S-oxide reductase MsrB -
  OC536_RS08285 (CNRVC190247_01670) - 1833703..1835076 (+) 1374 WP_032476235.1 L-cystine transporter -
  OC536_RS08290 (CNRVC190247_01671) sbcB 1835220..1836644 (+) 1425 WP_262102068.1 exodeoxyribonuclease I Machinery gene
  OC536_RS08295 (CNRVC190247_01672) - 1836676..1837050 (+) 375 WP_032476262.1 CidA/LrgA family protein -
  OC536_RS08300 (CNRVC190247_01673) - 1837041..1837715 (+) 675 WP_000266239.1 LrgB family protein -
  OC536_RS08305 (CNRVC190247_01674) cdd 1837885..1838772 (+) 888 WP_262102069.1 cytidine deaminase -
  OC536_RS08310 (CNRVC190247_01675) - 1838931..1839806 (+) 876 WP_000462870.1 AEC family transporter -
  OC536_RS08315 (CNRVC190247_01676) purT 1839960..1841135 (+) 1176 WP_001959616.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54530.88 Da        Isoelectric Point: 5.9820

>NTDB_id=1152346 OC536_RS08290 WP_262102068.1 1835220..1836644(+) (sbcB) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEATLITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1152346 OC536_RS08290 WP_262102068.1 1835220..1836644(+) (sbcB) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTTTTCGACTACGAGACTTGGGGGGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCACATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCAAACACCACTAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACACGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAACAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAACTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.945

100

0.989

Multiple sequence alignment