Detailed information NTG1152310

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OC617_RS11760
• Genome accession: NZ_OW443147
• Coordinates: 2605122..2606129 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain CNRVC190243 isolate YE-NCPHL-19014-PI
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2600122..2611129

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OC617_RS11750 (CNRVC190243H_02349)	cysM	2601286..2602173 (+)	888	WP_001279365.1	cysteine synthase CysM	-
OC617_RS11755 (CNRVC190243H_02350)	mutS	2602441..2605029 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
OC617_RS11760 (CNRVC190243H_02351)	rpoS	2605122..2606129 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
OC617_RS11765 (CNRVC190243H_02352)	nlpD	2606203..2607138 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
OC617_RS11770 (CNRVC190243H_02353)	-	2607138..2607764 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OC617_RS11775 (CNRVC190243H_02354)	surE	2607757..2608509 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
OC617_RS11780 (CNRVC190243H_02355)	truD	2608511..2609596 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
OC617_RS11785 (CNRVC190243H_02356)	ispF	2609626..2610102 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OC617_RS11790 (CNRVC190243H_02357)	ispD	2610099..2610797 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OC617_RS11795 (CNRVC190243H_02358)	ftsB	2610794..2611078 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=1152310 OC617_RS11760 WP_000116737.1 2605122..2606129(-) (rpoS) [Vibrio cholerae strain CNRVC190243 isolate YE-NCPHL-19014-PI]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=1152310 OC617_RS11760 WP_000116737.1 2605122..2606129(-) (rpoS) [Vibrio cholerae strain CNRVC190243 isolate YE-NCPHL-19014-PI]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1