Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG25_RS24255 Genome accession   NZ_CP010117
Coordinates   4709857..4710372 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain C2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4704857..4715372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG25_RS24210 (RG25_23035) csrA 4705309..4705494 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  RG25_RS24240 (RG25_23065) yqaB 4707087..4707653 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG25_RS24245 (RG25_23070) yqaA 4707650..4708078 (+) 429 WP_001287457.1 YqaA family protein -
  RG25_RS24250 (RG25_23075) gshA 4708151..4709707 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  RG25_RS24255 (RG25_23080) luxS 4709857..4710372 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  RG25_RS24260 (RG25_23085) emrB 4710436..4711974 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG25_RS24265 (RG25_23090) emrA 4711991..4713163 (-) 1173 WP_032254508.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RG25_RS24270 (RG25_23095) emrR 4713290..4713820 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RG25_RS24275 (RG25_23100) ygaH 4713911..4714246 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  RG25_RS24280 (RG25_23105) ygaZ 4714236..4714973 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=115231 RG25_RS24255 WP_001130211.1 4709857..4710372(+) (luxS) [Escherichia coli strain C2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=115231 RG25_RS24255 WP_001130211.1 4709857..4710372(+) (luxS) [Escherichia coli strain C2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment