Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QM552_RS17430 Genome accession   NZ_OW011623
Coordinates   3746195..3747565 (+) Length   456 a.a.
NCBI ID   WP_282811175.1    Uniprot ID   -
Organism   Thauera humireducens strain Piv1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3741195..3752565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM552_RS17400 (C4PIVTH_3658) - 3741344..3741694 (+) 351 WP_282811173.1 hypothetical protein -
  QM552_RS17405 (C4PIVTH_3659) tsaB 3741749..3742441 (+) 693 WP_282811174.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  QM552_RS17410 (C4PIVTH_3660) rimI 3742438..3742893 (+) 456 WP_048709595.1 ribosomal protein S18-alanine N-acetyltransferase -
  QM552_RS17415 (C4PIVTH_3661) - 3742952..3743842 (+) 891 WP_282811677.1 uracil-DNA glycosylase -
  QM552_RS17420 (C4PIVTH_3662) lplT 3743860..3745110 (-) 1251 WP_048709598.1 lysophospholipid transporter LplT -
  QM552_RS17425 (C4PIVTH_3663) - 3745275..3746195 (+) 921 WP_082794249.1 LysR family transcriptional regulator -
  QM552_RS17430 (C4PIVTH_3664) radA 3746195..3747565 (+) 1371 WP_282811175.1 DNA repair protein RadA Machinery gene
  QM552_RS17435 (C4PIVTH_3665) - 3747596..3749716 (-) 2121 WP_282811176.1 TonB-dependent receptor -
  QM552_RS17440 (C4PIVTH_3666) pip 3749801..3750784 (-) 984 WP_282811678.1 prolyl aminopeptidase -
  QM552_RS17445 pqqA 3751073..3751147 (+) 75 WP_106408400.1 pyrroloquinoline quinone precursor peptide PqqA -
  QM552_RS17450 (C4PIVTH_3669) pqqB 3751202..3752116 (+) 915 WP_282811177.1 pyrroloquinoline quinone biosynthesis protein PqqB -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48822.10 Da        Isoelectric Point: 7.6864

>NTDB_id=1152204 QM552_RS17430 WP_282811175.1 3746195..3747565(+) (radA) [Thauera humireducens strain Piv1]
MAKAKSAFVCSECGAQVPRWQGQCPQCQAWNTLSETIVDSGPSAGSRFAALAGQTSRLQPLSSLQPREEPRQPTGLDEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALSNLSAAHKVVYVSGEESGEQVALRAHRLQLPPSELQMLAEINLERILHT
LRDSRPRVAVIDSIQTVYSEALQSAPGSVAQVRECAAQLTRFAKQSGTSLILVGHVTKDGTLAGPRVLEHIVDTVLYFEG
DTHSSFRLIRAFKNRFGAVNELGVFAMTERGLRGVSNPSAIFLSQHSQQVAGSCVLITQEGTRPLLVEVQALVDASQSPN
PRRLSVGLEPTRLAMLLAVMHRHAGVVCFDQDVFVNAVGGVKITEPAADLAILFAIVSSLRDRPLRRGLAVFGEVGLAGE
IRPAPRGQERLKEAAKLGFDIAIVPKANAPKQAIDGLKVIAVDRVEEALEKMRELE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1152204 QM552_RS17430 WP_282811175.1 3746195..3747565(+) (radA) [Thauera humireducens strain Piv1]
ATGGCGAAGGCGAAGTCGGCCTTCGTCTGCAGCGAATGCGGCGCGCAGGTGCCGCGCTGGCAGGGGCAGTGTCCCCAATG
CCAGGCCTGGAACACCCTTAGCGAAACGATCGTTGATAGCGGCCCCTCCGCGGGGAGCCGCTTTGCCGCGCTGGCCGGAC
AGACCAGCCGGCTGCAGCCGCTGTCCTCGCTGCAGCCACGCGAGGAACCGCGCCAGCCCACCGGTCTGGACGAGTTCGAC
CGCGTGCTCGGCGGCGGCCTCGTCGCCGGCGGCGTCGTCCTGATCGGCGGCGACCCGGGCATCGGCAAGTCGACCCTGCT
GCTGCAGGCATTGTCGAACCTGTCGGCCGCACACAAAGTGGTCTACGTCAGCGGCGAAGAGTCGGGCGAACAGGTGGCGC
TGCGCGCGCATCGTCTGCAACTTCCGCCGTCCGAGCTGCAGATGCTCGCCGAGATCAACCTCGAACGCATCCTGCACACG
CTGCGCGACTCAAGGCCGCGCGTCGCGGTCATCGATTCGATCCAGACGGTGTATTCCGAAGCCCTGCAGTCGGCCCCGGG
TTCGGTCGCCCAGGTGCGCGAATGTGCAGCGCAACTCACGCGCTTTGCCAAGCAGAGCGGCACCAGCCTGATCCTGGTCG
GCCACGTCACCAAGGACGGCACGCTGGCCGGCCCGCGCGTGCTCGAACACATCGTCGACACGGTGCTGTATTTCGAGGGT
GACACCCACTCGAGCTTCCGCCTGATCCGCGCGTTCAAGAACCGCTTCGGCGCGGTTAACGAACTGGGCGTGTTCGCGAT
GACCGAACGCGGCCTGCGCGGTGTCTCCAATCCGTCGGCCATCTTCCTGTCGCAGCATTCGCAGCAGGTCGCGGGCAGCT
GCGTGCTGATCACCCAGGAGGGCACGCGTCCGCTGCTGGTGGAGGTGCAGGCGCTGGTCGATGCCTCGCAGAGCCCCAAT
CCGCGGCGGCTGTCGGTCGGCCTGGAGCCGACACGGCTGGCCATGCTGCTCGCGGTCATGCACCGCCATGCAGGGGTGGT
GTGCTTCGACCAGGACGTGTTCGTGAATGCGGTCGGCGGAGTCAAGATCACCGAACCGGCGGCCGACCTGGCCATCCTGT
TCGCGATCGTTTCTTCGCTGCGCGACCGACCGCTGCGGCGCGGCCTCGCGGTGTTTGGCGAGGTCGGCCTGGCGGGCGAG
ATCCGGCCCGCACCGCGCGGTCAGGAACGCCTGAAGGAAGCAGCGAAACTCGGCTTCGACATCGCGATCGTGCCCAAGGC
CAATGCGCCCAAGCAGGCGATCGACGGTCTCAAGGTCATCGCCGTCGACCGCGTCGAGGAAGCACTGGAGAAGATGCGCG
AGCTGGAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-451)

AAA domain (AAA_25)

(82-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

100

0.502
  radA Streptococcus mitis NCTC 12261

45.077

100

0.452
  radA Streptococcus pneumoniae Rx1

45.077

100

0.452
  radA Streptococcus pneumoniae D39

45.077

100

0.452
  radA Streptococcus pneumoniae R6

45.077

100

0.452
  radA Streptococcus pneumoniae TIGR4

45.077

100

0.452
  radA Streptococcus mitis SK321

44.76

100

0.45

Multiple sequence alignment