Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   MD993_RS07125 Genome accession   NZ_OV648025
Coordinates   1542202..1543272 (-) Length   356 a.a.
NCBI ID   WP_031787261.1    Uniprot ID   -
Organism   Staphylococcus argenteus isolate 20S00001-1_long     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1537202..1548272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MD993_RS07085 gcvPA 1537379..1538725 (-) 1347 WP_031787255.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MD993_RS07090 gcvT 1538744..1539835 (-) 1092 WP_000093342.1 glycine cleavage system aminomethyltransferase GcvT -
  MD993_RS07095 - 1539992..1540516 (-) 525 WP_031787256.1 shikimate kinase -
  MD993_RS07100 - 1540503..1540652 (-) 150 WP_072324192.1 hypothetical protein -
  MD993_RS07105 comGF 1540751..1541248 (-) 498 WP_072324133.1 competence type IV pilus minor pilin ComGF Machinery gene
  MD993_RS07110 comGE 1541166..1541465 (-) 300 WP_031787259.1 hypothetical protein Machinery gene
  MD993_RS07115 comGD 1541452..1541898 (-) 447 WP_072324131.1 competence type IV pilus minor pilin ComGD Machinery gene
  MD993_RS07120 comGC 1541876..1542187 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  MD993_RS07125 comGB 1542202..1543272 (-) 1071 WP_031787261.1 competence type IV pilus assembly protein ComGB Machinery gene
  MD993_RS07130 comGA 1543244..1544218 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  MD993_RS07135 - 1544270..1544893 (-) 624 WP_031787263.1 MBL fold metallo-hydrolase -
  MD993_RS07140 - 1544890..1545219 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  MD993_RS07145 - 1545219..1546205 (-) 987 WP_000161316.1 ROK family glucokinase -
  MD993_RS07150 - 1546205..1546405 (-) 201 WP_000087563.1 YqgQ family protein -
  MD993_RS07155 - 1546386..1547849 (-) 1464 WP_031787264.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41705.06 Da        Isoelectric Point: 10.2079

>NTDB_id=1151899 MD993_RS07125 WP_031787261.1 1542202..1543272(-) (comGB) [Staphylococcus argenteus isolate 20S00001-1_long]
MKVQWISIFKKYSKKRQLNRAQQIELIVNLKNLLQYGFTLYQSFQFLNLQIKYKDKELSSKILSEISNGASCSKILAMLG
YSDTIVMQIYLAERFGNIVDILDETVKFMKINRKSEQRLLKTLQYPLVLVSVFIGMIMMLNITVIPQFQQLYTSMNIKLS
TFQKALSFFISSLPSLILITIFLILILTSSIKLIYNRLTMLYKINFMMKIPILSSYYKLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGEYLLTYSEKGHGLPEILSNLKCFKPQLIKFIQQGEKRGKLEVELRLYSQILVKQIEDKAIR
QTQFIQPILFLILGLFIVAIYLVIMLPMFQMMQSIN

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1151899 MD993_RS07125 WP_031787261.1 1542202..1543272(-) (comGB) [Staphylococcus argenteus isolate 20S00001-1_long]
GTGAAAGTACAATGGATAAGTATATTTAAAAAATATTCTAAGAAACGACAATTAAACAGAGCACAACAAATAGAGTTAAT
TGTAAATTTAAAGAATTTACTACAATATGGGTTCACATTATATCAAAGCTTTCAGTTTCTAAACCTTCAAATTAAATATA
AAGATAAAGAGCTATCGTCAAAAATTCTTAGCGAAATTTCAAATGGTGCATCGTGTAGCAAAATACTAGCCATGTTAGGC
TATAGTGATACTATAGTAATGCAAATTTACTTAGCAGAAAGGTTTGGTAATATTGTAGATATCTTAGATGAAACAGTGAA
ATTTATGAAAATAAATAGAAAATCCGAGCAAAGATTATTAAAAACTTTGCAATATCCCTTAGTGTTAGTTTCAGTATTTA
TAGGAATGATTATGATGTTGAATATCACTGTTATTCCACAATTCCAACAACTATATACTTCAATGAATATTAAATTATCA
ACATTTCAAAAAGCACTTTCCTTTTTTATCTCAAGTTTACCCTCATTAATTTTAATAACAATTTTTCTTATTTTAATTTT
AACCTCCTCAATAAAATTAATTTATAACAGGCTAACGATGTTATATAAAATCAACTTTATGATGAAGATACCAATTTTAT
CCAGTTATTATAAGTTGTTCAAAACTTATTTTGTTACAAATGAATTAGTTTTATTCTATAAAAATGGTATTACACTCCAA
TCTATCGTTGATGTTTATATCAATCATAGTAGTGATCCATTCAGACAATTTTTAGGTGAATATTTATTAACATATTCAGA
AAAAGGACATGGGTTACCGGAAATTTTATCAAATTTAAAGTGCTTTAAACCACAATTGATAAAGTTTATACAGCAAGGTG
AAAAAAGAGGGAAATTAGAAGTTGAGCTTAGATTATACTCTCAAATTTTAGTGAAACAAATTGAAGATAAAGCGATTCGT
CAAACTCAATTTATACAACCAATTTTATTTTTAATCTTAGGGCTTTTTATTGTTGCAATTTATTTGGTAATAATGCTACC
AATGTTCCAAATGATGCAAAGTATTAATTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(32-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

78.028

99.719

0.778
  comGB Staphylococcus aureus N315

78.028

99.719

0.778

Multiple sequence alignment