Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | X875_RS06375 | Genome accession | NZ_CP006953 |
| Coordinates | 1351435..1351914 (-) | Length | 159 a.a. |
| NCBI ID | WP_025217064.1 | Uniprot ID | W0QBW2 |
| Organism | Mannheimia varigena USDA-ARS-USMARC-1388 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1346435..1356914
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| X875_RS06350 (X875_12590) | yacG | 1347340..1347525 (-) | 186 | WP_025217069.1 | DNA gyrase inhibitor YacG | - |
| X875_RS06355 (X875_12600) | coaE | 1347507..1348142 (-) | 636 | WP_025342722.1 | dephospho-CoA kinase | - |
| X875_RS06360 (X875_12610) | - | 1348174..1348830 (-) | 657 | WP_025342723.1 | prepilin peptidase | - |
| X875_RS06365 (X875_12620) | pilC | 1348834..1350030 (-) | 1197 | WP_025342724.1 | type II secretion system F family protein | Machinery gene |
| X875_RS06370 (X875_12630) | pilB | 1350023..1351414 (-) | 1392 | WP_025342725.1 | GspE/PulE family protein | Machinery gene |
| X875_RS06375 (X875_12640) | pilA | 1351435..1351914 (-) | 480 | WP_025217064.1 | prepilin peptidase-dependent pilin | Machinery gene |
| X875_RS06380 (X875_12650) | radA | 1352094..1353473 (+) | 1380 | WP_025247570.1 | DNA repair protein RadA | - |
| X875_RS06385 (X875_12660) | - | 1353527..1353760 (-) | 234 | WP_025247569.1 | YgjV family protein | - |
| X875_RS06390 (X875_12670) | - | 1353987..1355297 (-) | 1311 | WP_025342726.1 | anaerobic C4-dicarboxylate transporter | - |
| X875_RS06395 (X875_12680) | - | 1355315..1356010 (-) | 696 | WP_025342727.1 | aspartate/glutamate racemase family protein | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 17107.53 Da Isoelectric Point: 9.0783
>NTDB_id=115174 X875_RS06375 WP_025217064.1 1351435..1351914(-) (pilA) [Mannheimia varigena USDA-ARS-USMARC-1388]
MQKIVHFRPLYIRQLNKAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLRASASYKSDVELCIYNSNRLDNCSG
GTNGIQANKTSGNETKYLNSITVTKGVITVTGKGSLDGYSYTLTPTFSNNTISWSVNCKGSDTSLFPAGFCSATATPNG
MQKIVHFRPLYIRQLNKAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLRASASYKSDVELCIYNSNRLDNCSG
GTNGIQANKTSGNETKYLNSITVTKGVITVTGKGSLDGYSYTLTPTFSNNTISWSVNCKGSDTSLFPAGFCSATATPNG
Nucleotide
Download Length: 480 bp
>NTDB_id=115174 X875_RS06375 WP_025217064.1 1351435..1351914(-) (pilA) [Mannheimia varigena USDA-ARS-USMARC-1388]
ATGCAAAAAATTGTACATTTTCGACCGCTTTACATTCGTCAATTAAACAAGGCGTTTACATTAATTGAGTTGATGATCGT
GATTGCGATCATTGCCATTCTTGCAACTATTGCCATTCCCTCCTACAACTCTTACACGCAAAAAGCTGCGTTATCGGAGT
TGTTGCGGGCTTCGGCTTCCTATAAATCAGATGTTGAGTTGTGTATTTATAATAGTAATAGGCTGGATAATTGCTCTGGT
GGCACGAATGGTATTCAAGCCAATAAAACGAGTGGAAATGAAACGAAATATCTCAATTCGATTACCGTAACTAAAGGCGT
GATTACCGTAACAGGCAAAGGTTCGCTTGATGGCTATAGTTATACACTGACACCAACTTTTTCCAATAATACAATTAGTT
GGTCAGTAAATTGCAAAGGGAGTGATACAAGCTTATTCCCAGCGGGTTTCTGTAGTGCTACGGCTACACCAAATGGCTAA
ATGCAAAAAATTGTACATTTTCGACCGCTTTACATTCGTCAATTAAACAAGGCGTTTACATTAATTGAGTTGATGATCGT
GATTGCGATCATTGCCATTCTTGCAACTATTGCCATTCCCTCCTACAACTCTTACACGCAAAAAGCTGCGTTATCGGAGT
TGTTGCGGGCTTCGGCTTCCTATAAATCAGATGTTGAGTTGTGTATTTATAATAGTAATAGGCTGGATAATTGCTCTGGT
GGCACGAATGGTATTCAAGCCAATAAAACGAGTGGAAATGAAACGAAATATCTCAATTCGATTACCGTAACTAAAGGCGT
GATTACCGTAACAGGCAAAGGTTCGCTTGATGGCTATAGTTATACACTGACACCAACTTTTTCCAATAATACAATTAGTT
GGTCAGTAAATTGCAAAGGGAGTGATACAAGCTTATTCCCAGCGGGTTTCTGTAGTGCTACGGCTACACCAAATGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
65.409 |
100 |
0.654 |
| pilA | Haemophilus influenzae 86-028NP |
57.746 |
89.308 |
0.516 |
| pilA | Haemophilus influenzae Rd KW20 |
55.634 |
89.308 |
0.497 |