Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LSO75_RS02135 Genome accession   NZ_OV040584
Coordinates   429183..429836 (+) Length   217 a.a.
NCBI ID   WP_005692773.1    Uniprot ID   -
Organism   Haemophilus influenzae isolate KR271     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 424183..434836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO75_RS02110 (KRLU271_LOCUS394) - 424621..425625 (-) 1005 WP_005651072.1 ornithine carbamoyltransferase -
  LSO75_RS02115 (KRLU271_LOCUS395) - 426029..426847 (+) 819 WP_044364684.1 Cof-type HAD-IIB family hydrolase -
  LSO75_RS02120 (KRLU271_LOCUS396) crcB 426847..427221 (+) 375 WP_044364686.1 fluoride efflux transporter CrcB -
  LSO75_RS02125 (KRLU271_LOCUS397) recX 427230..427664 (-) 435 WP_231082536.1 recombination regulator RecX -
  LSO75_RS02130 (KRLU271_LOCUS398) recA 427747..428811 (-) 1065 WP_005654959.1 recombinase RecA Machinery gene
  LSO75_RS02135 (KRLU271_LOCUS399) sxy/tfoX 429183..429836 (+) 654 WP_005692773.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=1151726 LSO75_RS02135 WP_005692773.1 429183..429836(+) (sxy/tfoX) [Haemophilus influenzae isolate KR271]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1151726 LSO75_RS02135 WP_005692773.1 429183..429836(+) (sxy/tfoX) [Haemophilus influenzae isolate KR271]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991

Multiple sequence alignment