Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   LSO75_RS00270 Genome accession   NZ_OV040584
Coordinates   57114..57626 (-) Length   170 a.a.
NCBI ID   WP_011272299.1    Uniprot ID   Q4QLX0
Organism   Haemophilus influenzae isolate KR271     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52114..62626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO75_RS00255 (KRLU271_LOCUS52) comQ 55435..55722 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  LSO75_RS00260 (KRLU271_LOCUS53) comP 55715..56398 (-) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  LSO75_RS00265 (KRLU271_LOCUS54) comO 56395..57114 (-) 720 WP_011272300.1 type II secretion system protein J Machinery gene
  LSO75_RS00270 (KRLU271_LOCUS55) comN 57114..57626 (-) 513 WP_011272299.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LSO75_RS00275 (KRLU271_LOCUS56) suhB 57826..58638 (+) 813 WP_011272298.1 inositol-1-monophosphatase -
  LSO75_RS00280 (KRLU271_LOCUS57) nrfE 58747..60654 (+) 1908 WP_011272297.1 heme lyase NrfEFG subunit NrfE -
  LSO75_RS00285 (KRLU271_LOCUS58) - 60654..61184 (+) 531 WP_005688388.1 DsbE family thiol:disulfide interchange protein -
  LSO75_RS00290 (KRLU271_LOCUS59) nrfF 61181..62323 (+) 1143 WP_005688390.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19874.13 Da        Isoelectric Point: 8.7271

>NTDB_id=1151721 LSO75_RS00270 WP_011272299.1 57114..57626(-) (comN) [Haemophilus influenzae isolate KR271]
MQKGVTLVELLIGLAIISIVLSFVVPLWQTDSPKTILAKEQHRLYLFLRQIQVRAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1151721 LSO75_RS00270 WP_011272299.1 57114..57626(-) (comN) [Haemophilus influenzae isolate KR271]
ATGCAGAAAGGTGTGACATTAGTGGAATTATTGATTGGATTAGCAATCATCAGCATTGTGCTGAGTTTTGTCGTGCCATT
ATGGCAAACCGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCTTGTATTTATTTCTACGACAAATTCAGGTTC
GTGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCGCATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

95.882

100

0.959

Multiple sequence alignment