Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   LSO75_RS00255 Genome accession   NZ_OV040584
Coordinates   55435..55722 (-) Length   95 a.a.
NCBI ID   WP_021034778.1    Uniprot ID   -
Organism   Haemophilus influenzae isolate KR271     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50435..60722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO75_RS00245 (KRLU271_LOCUS50) nrdR 51520..51969 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  LSO75_RS00250 (KRLU271_LOCUS51) recC 52024..55389 (-) 3366 WP_044364474.1 exodeoxyribonuclease V subunit gamma -
  LSO75_RS00255 (KRLU271_LOCUS52) comQ 55435..55722 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  LSO75_RS00260 (KRLU271_LOCUS53) comP 55715..56398 (-) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  LSO75_RS00265 (KRLU271_LOCUS54) comO 56395..57114 (-) 720 WP_011272300.1 type II secretion system protein J Machinery gene
  LSO75_RS00270 (KRLU271_LOCUS55) comN 57114..57626 (-) 513 WP_011272299.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LSO75_RS00275 (KRLU271_LOCUS56) suhB 57826..58638 (+) 813 WP_011272298.1 inositol-1-monophosphatase -
  LSO75_RS00280 (KRLU271_LOCUS57) nrfE 58747..60654 (+) 1908 WP_011272297.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11057.89 Da        Isoelectric Point: 9.2201

>NTDB_id=1151718 LSO75_RS00255 WP_021034778.1 55435..55722(-) (comQ) [Haemophilus influenzae isolate KR271]
MNKGMSLITLLFSLALFSVLFLVFNQWTAEQRKSAVKIYQDFQATQIAENQAQRQFLGLACEQLIQQNGLTFRIRCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1151718 LSO75_RS00255 WP_021034778.1 55435..55722(-) (comQ) [Haemophilus influenzae isolate KR271]
ATGAATAAAGGAATGTCTCTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAGAACAGCGAAAAAGTGCGGTAAAAATTTATCAAGATTTTCAGGCAACACAAATTGCAGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCGATGTGAAAATGAACGC
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

92.632

100

0.926

Multiple sequence alignment