Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   M7777_RS06770 Genome accession   NZ_OV024757
Coordinates   1306388..1306864 (-) Length   158 a.a.
NCBI ID   WP_034349477.1    Uniprot ID   -
Organism   Deinococcus radiodurans isolate DRR11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1291495..1306345 1306388..1306864 flank 43


Gene organization within MGE regions


Location: 1291495..1306864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M7777_RS06705 - 1291495..1294089 (-) 2595 WP_027479533.1 hypothetical protein -
  M7777_RS06710 - 1294093..1294698 (-) 606 WP_010887181.1 OmpA family protein -
  M7777_RS06715 - 1294723..1295793 (-) 1071 WP_227085990.1 hypothetical protein -
  M7777_RS06720 - 1295962..1299162 (-) 3201 WP_227085991.1 tubulin-like doman-containing protein -
  M7777_RS06725 - 1299174..1299503 (-) 330 WP_010887184.1 hypothetical protein -
  M7777_RS06730 - 1299503..1300822 (-) 1320 WP_162177565.1 hypothetical protein -
  M7777_RS06735 - 1301033..1301827 (-) 795 WP_034349478.1 DUF72 domain-containing protein -
  M7777_RS06740 - 1301852..1302529 (-) 678 WP_010887187.1 glycerophosphodiester phosphodiesterase -
  M7777_RS06745 - 1302634..1303317 (+) 684 WP_010887188.1 SDR family oxidoreductase -
  M7777_RS06750 - 1303394..1304161 (+) 768 WP_010887189.1 sulfite exporter TauE/SafE family protein -
  M7777_RS06755 - 1304158..1304433 (+) 276 WP_027479532.1 hypothetical protein -
  M7777_RS06760 - 1304417..1304794 (-) 378 WP_010887191.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  M7777_RS06765 - 1305161..1306345 (+) 1185 WP_162177563.1 HTTM domain-containing protein -
  M7777_RS06770 pilV 1306388..1306864 (-) 477 WP_034349477.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 15369.17 Da        Isoelectric Point: 7.5899

>NTDB_id=1151703 M7777_RS06770 WP_034349477.1 1306388..1306864(-) (pilV) [Deinococcus radiodurans isolate DRR11]
MKNTTQGFTLIELLIVIAIIGILAAVLIPNLLGARAKANDSATQSYIRNCYTAVEVARGADGRLPAAGNCDSTANLGTNA
VATPGAITAAGAYSLDGTGSKFAVTATSVTNKTFCFDGAKMGEGTGATGACTFSTSTGTGTGTGTGTGTGTGTGTGSN

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1151703 M7777_RS06770 WP_034349477.1 1306388..1306864(-) (pilV) [Deinococcus radiodurans isolate DRR11]
ATGAAGAACACCACCCAAGGCTTCACCCTGATCGAACTGCTCATCGTCATCGCCATCATCGGCATCCTGGCCGCCGTGTT
GATCCCCAACCTGCTGGGCGCCCGCGCCAAGGCCAACGACAGCGCCACCCAGAGCTACATCCGCAACTGCTACACCGCCG
TGGAAGTGGCCCGTGGTGCTGACGGCCGCCTGCCTGCTGCTGGCAACTGCGACAGCACGGCCAACCTGGGTACCAACGCT
GTGGCTACCCCTGGTGCAATCACTGCGGCAGGCGCTTACAGCCTGGATGGTACTGGTAGCAAGTTTGCCGTTACTGCCAC
CAGCGTGACCAACAAGACCTTCTGCTTCGACGGCGCGAAGATGGGCGAAGGCACTGGCGCTACTGGTGCCTGCACCTTCA
GCACCAGCACCGGCACCGGCACTGGTACCGGCACTGGTACCGGCACTGGCACCGGCACTGGTACCGGCAGCAACTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-27)

Pilin A4 (PilA4)

(39-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1

Multiple sequence alignment