Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LQ189_RS15915 Genome accession   NZ_OU957226
Coordinates   3613070..3614431 (-) Length   453 a.a.
NCBI ID   WP_230158525.1    Uniprot ID   -
Organism   Flavobacterium sp. CECT 9288 isolate UB20; 130122 CR 30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3608070..3619431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ189_RS15880 (FVB9288_03345) - 3608510..3608980 (+) 471 WP_230158518.1 Imm44 family immunity protein -
  LQ189_RS16330 - 3609132..3609329 (+) 198 WP_370634899.1 polymorphic toxin type 23 domain-containing protein -
  LQ189_RS15885 (FVB9288_03346) - 3609241..3609573 (+) 333 WP_255667907.1 polymorphic toxin type 23 domain-containing protein -
  LQ189_RS15890 (FVB9288_03347) - 3609567..3610076 (+) 510 WP_230158519.1 hypothetical protein -
  LQ189_RS15895 (FVB9288_03348) - 3610222..3610734 (-) 513 WP_230158520.1 hypothetical protein -
  LQ189_RS15900 (FVB9288_03349) - 3610944..3611345 (-) 402 WP_230158521.1 heme-binding protein -
  LQ189_RS15905 (FVB9288_03351) - 3611561..3612109 (-) 549 WP_230158522.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  LQ189_RS15910 (FVB9288_03352) - 3612197..3613036 (-) 840 WP_230158523.1 AraC family transcriptional regulator -
  LQ189_RS15915 (FVB9288_03353) radA 3613070..3614431 (-) 1362 WP_230158525.1 DNA repair protein RadA Machinery gene
  LQ189_RS15920 (FVB9288_03354) - 3614431..3615579 (-) 1149 WP_230158527.1 alpha/beta hydrolase-fold protein -
  LQ189_RS15925 (FVB9288_03355) panD 3615835..3616185 (-) 351 WP_230158530.1 aspartate 1-decarboxylase -
  LQ189_RS15930 (FVB9288_03356) panC 3616200..3617048 (-) 849 WP_230158532.1 pantoate--beta-alanine ligase -
  LQ189_RS15935 (FVB9288_03357) - 3617157..3617963 (+) 807 WP_230158534.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49916.39 Da        Isoelectric Point: 6.3732

>NTDB_id=1151672 LQ189_RS15915 WP_230158525.1 3613070..3614431(-) (radA) [Flavobacterium sp. CECT 9288 isolate UB20; 130122 CR 30]
MSKVKTTFFCQNCGSQYAKWQGQCNSCKEWNTIAEEIIQKQEKVAWKSEPTPTSKAPRPLRINEIDSAQEIRMDTTDGEL
NRVLGGGIVPGSLILLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITPSGDNCYILTETKTQNIFKQI
EAIQPEIVIIDSIQTLHTDYIESTPGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAEIGIYEMLGSGLREVANPSEILISHKNEELSGTAIASTLEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNITGGISVDDPAIDLAVVAAILSSNEDIPVNKDFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFSTIFVSKYNKITLKNTGIQIRMVAKIEDVASELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1151672 LQ189_RS15915 WP_230158525.1 3613070..3614431(-) (radA) [Flavobacterium sp. CECT 9288 isolate UB20; 130122 CR 30]
ATGTCAAAAGTAAAAACTACTTTTTTTTGCCAAAATTGCGGTTCTCAATATGCCAAATGGCAAGGACAATGCAATTCTTG
CAAAGAATGGAACACTATTGCCGAAGAAATAATTCAGAAACAAGAAAAAGTGGCTTGGAAGAGTGAGCCCACTCCTACTA
GCAAAGCACCACGACCATTGCGCATTAATGAAATTGATTCGGCGCAAGAGATTCGCATGGATACTACTGATGGCGAATTG
AACCGCGTTTTAGGTGGTGGTATTGTTCCAGGTTCTTTGATTCTTTTAGGCGGTGAACCAGGCATTGGAAAAAGTACGCT
TTTGCTGCAAATTTCCTTAAAATTACCTTACAAAACGCTATACGTATCCGGCGAGGAAAGTCAGAAACAAATAAAAATGC
GAGCCGAAAGGATAACACCAAGCGGTGACAATTGCTACATCTTGACCGAAACCAAGACACAAAACATCTTCAAACAAATT
GAAGCCATTCAACCAGAGATTGTAATTATAGATTCCATTCAAACTTTGCATACGGATTATATTGAATCGACTCCAGGGAG
TATTTCTCAAATCAGAGAAACTACTGCAGAACTAATAAAATTTGCCAAAGAAACCAACATTCCTGTGATTCTCATCGGTC
ATATTACAAAAGATGGAAACATAGCAGGCCCTAAAATTCTGGAGCACATGGTGGACACGGTGTTGCAGTTTGAAGGAGAC
CGCAATCACGTTTATCGAATTTTACGCTCTTTAAAAAACAGATTTGGCTCTACGGCCGAGATTGGCATTTATGAAATGCT
CGGTAGCGGATTACGAGAAGTGGCAAATCCATCTGAAATATTGATTTCGCACAAAAACGAGGAATTATCAGGTACCGCAA
TTGCCTCAACTCTGGAAGGCATGCGTCCTTTGATGATAGAAATTCAAGCACTCGTAAGCACCGCAGTCTACGGAACGCCA
CAGCGAAGTACCACAGGATACAATGCCAAACGACTCAACATGATTTTGGCAGTACTCGAAAAAAGAGCTGGTTTTAGGCT
TGGCGCCAAAGATGTATTTTTGAATATTACAGGCGGAATTTCGGTAGACGACCCCGCGATTGACTTAGCCGTTGTTGCTG
CCATTCTATCTTCAAATGAAGACATTCCGGTTAATAAAGATTTTTGTTTTGCTGGCGAAGTAGGACTTTCGGGCGAAATA
CGTCCTGTAAACCGAGTAGATCAGCGCATTCAAGAAGCAGAAAAACTAGGATTTTCGACCATTTTTGTATCTAAATACAA
TAAAATCACATTAAAAAACACGGGTATACAAATTAGGATGGTCGCTAAAATAGAAGATGTAGCAAGTGAGCTATTTGGAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-219)

Subunit ChlI of Mg-chelatase (ChlI)

(315-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

49.781

100

0.501
  radA Streptococcus pneumoniae Rx1

49.781

100

0.501
  radA Streptococcus pneumoniae D39

49.781

100

0.501
  radA Streptococcus pneumoniae TIGR4

49.781

100

0.501
  radA Streptococcus mitis NCTC 12261

49.561

100

0.499
  radA Streptococcus mitis SK321

49.561

100

0.499
  radA Bacillus subtilis subsp. subtilis str. 168

48.673

99.779

0.486

Multiple sequence alignment