Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LWS60_RS05095 Genome accession   NZ_OU701452
Coordinates   1103551..1104180 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate CNR65D6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1098551..1109180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWS60_RS05075 ycbZ 1098941..1100701 (-) 1761 WP_000156479.1 AAA family ATPase -
  LWS60_RS05080 matP 1100887..1101339 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LWS60_RS05085 ompA 1101414..1102466 (-) 1053 WP_000750418.1 porin OmpA -
  LWS60_RS05090 sulA 1102823..1103332 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  LWS60_RS05095 sxy/tfoX 1103551..1104180 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LWS60_RS05100 yccS 1104143..1106305 (-) 2163 WP_001550920.1 YccS family putative transporter -
  LWS60_RS05105 yccF 1106315..1106761 (-) 447 WP_001261235.1 YccF domain-containing protein -
  LWS60_RS05110 helD 1106884..1108938 (+) 2055 WP_001550921.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1151511 LWS60_RS05095 WP_000839153.1 1103551..1104180(+) (sxy/tfoX) [Escherichia coli isolate CNR65D6]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1151511 LWS60_RS05095 WP_000839153.1 1103551..1104180(+) (sxy/tfoX) [Escherichia coli isolate CNR65D6]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment