Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LWS57_RS15775 Genome accession   NZ_OU701449
Coordinates   3222303..3222932 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate CNR85I8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3217303..3227932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWS57_RS15760 helD 3217545..3219599 (-) 2055 WP_001550921.1 DNA helicase IV -
  LWS57_RS15765 yccF 3219722..3220168 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LWS57_RS15770 yccS 3220178..3222340 (+) 2163 WP_001550920.1 YccS family putative transporter -
  LWS57_RS15775 sxy/tfoX 3222303..3222932 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LWS57_RS15780 sulA 3223151..3223660 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  LWS57_RS15785 ompA 3224017..3225069 (+) 1053 WP_000750418.1 porin OmpA -
  LWS57_RS15790 matP 3225144..3225596 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LWS57_RS15795 ycbZ 3225782..3227542 (+) 1761 WP_000156479.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1151500 LWS57_RS15775 WP_000839153.1 3222303..3222932(-) (sxy/tfoX) [Escherichia coli isolate CNR85I8]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1151500 LWS57_RS15775 WP_000839153.1 3222303..3222932(-) (sxy/tfoX) [Escherichia coli isolate CNR85I8]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment