Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   RC72_RS23220 Genome accession   NZ_CP010116
Coordinates   4504850..4506082 (+) Length   410 a.a.
NCBI ID   WP_073473355.1    Uniprot ID   -
Organism   Escherichia coli strain C1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4499850..4511082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC72_RS23205 (RC72_22080) - 4500365..4502041 (+) 1677 WP_001578965.1 polysaccharide biosynthesis/export family protein -
  RC72_RS23210 (RC72_22085) kdsB 4502051..4502791 (+) 741 WP_001578967.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RC72_RS23215 (RC72_22090) - 4502788..4504815 (+) 2028 WP_073473352.1 capsular polysaccharide biosynthesis protein -
  RC72_RS23220 (RC72_22095) kpsS 4504850..4506082 (+) 1233 WP_073473355.1 capsular biosynthesis protein Regulator
  RC72_RS23225 - 4506981..4507655 (-) 675 WP_073473358.1 hypothetical protein -
  RC72_RS23230 (RC72_22105) - 4508322..4508984 (-) 663 WP_073473361.1 ABC transporter ATP-binding protein -
  RC72_RS23235 (RC72_22110) - 4508981..4509757 (-) 777 WP_073473365.1 ABC transporter permease -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 49012.50 Da        Isoelectric Point: 10.0331

>NTDB_id=115149 RC72_RS23220 WP_073473355.1 4504850..4506082(+) (kpsS) [Escherichia coli strain C1]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWATSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRREFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNDLDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQAEFKPDMKLFKKIRGYLLVKTQVNWVYYGDFISEYESKD
NNFTFIPQKR

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=115149 RC72_RS23220 WP_073473355.1 4504850..4506082(+) (kpsS) [Escherichia coli strain C1]
ATGCAAGGCAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTTTTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTAGTATTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGTTGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGACACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGGTGGGCAACGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGACCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAATTTAAAACCTTCAACGATG
AAACGTATTGGCCATGCAATGTGGTATTACCTGATGGGCTGGCATTACCGTCGTGAGTTTCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGACCTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAAATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
GAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCATGCAAAAGCGGTGGTA
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTAACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGAGTTTAAACCGGATATGAAACTGTTTAAGAAGA
TTCGGGGGTATTTATTGGTGAAGACGCAGGTGAATTGGGTTTATTATGGGGATTTTATTTCTGAATACGAGAGTAAGGAT
AATAACTTTACATTTATACCACAAAAGCGATAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.186

95.854

0.376