Detailed information NTG0115143

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: X793_RS00270
• Genome accession: NZ_CP006950
• Coordinates: 53763..55151 (+)
• Length: 462 a.a.
• NCBI ID: WP_041340828.1
• Uniprot ID: -
• Organism: Dehalococcoides mccartyi CG4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 48763..60151

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
X793_RS00265 (X793_00280)	-	51068..53542 (+)	2475	WP_041340825.1	ATP-dependent Clp protease ATP-binding subunit	-
X793_RS00270 (X793_00285)	radA	53763..55151 (+)	1389	WP_041340828.1	DNA repair protein RadA	Machinery gene
X793_RS00275 (X793_00290)	-	55138..55821 (+)	684	WP_041340830.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
X793_RS00280 (X793_00295)	ispF	55827..56300 (+)	474	WP_010935868.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
X793_RS00285 (X793_00300)	cysS	56304..57680 (+)	1377	WP_041340833.1	cysteine--tRNA ligase	-
X793_RS07535	-	58350..59399 (-)	1050	Protein_57	recombinase family protein	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49476.88 Da
• Isoelectric Point: 7.6049

>NTDB_id=115143 X793_RS00270 WP_041340828.1 53763..55151(+) (radA) [Dehalococcoides mccartyi CG4]
MEKSRRVYVCSNCGRESLKWLGRCPACQEWNTFEEKTVVSPIGRKSEPARVISPAAELSSLQAAETTRRSLSISEFNRVL
GGGIVPGSLMLLGGEPGIGKSTLLLQVAASVAQSGGKVVYVSGEENPAQIKMRAQRLGISGEGLFLMAETDLNAILAQLS
VLCPSLVVIDSIQTVFLPELEAAPGAINQVRESALRLMQWAKSSGASVFITAHVTKEGNIAGPRILEHIVDVVMYFEGES
QSAYRLVRSVKNRFGSTNEVGIFEMKSEGLVEVANPSQIFLSNRQANTVGSAVTAVLEGSRPLLVEVQALTNTTSFGQPR
RTANGVDFNRTLMIAAVLSKRLSMRLGTQDIIVNATGGIRLDEPAADLAIALAIASSYRDTGVCPETIALGEIGLSGELR
TIPHLERRLSEASRLGFKRALVPAGANCHNVHNIQIIPVSTVKEAVKLALTGVKTETEDVFE

Nucleotide

• Length: 1389 bp

>NTDB_id=115143 X793_RS00270 WP_041340828.1 53763..55151(+) (radA) [Dehalococcoides mccartyi CG4]
ATGGAAAAAAGCCGTAGAGTTTATGTTTGTTCCAACTGCGGGCGTGAGAGCCTGAAATGGCTGGGCCGCTGCCCCGCCTG
TCAGGAGTGGAATACTTTTGAAGAAAAAACGGTTGTTTCGCCCATAGGGCGTAAAAGTGAACCTGCCCGGGTTATCAGCC
CGGCGGCAGAGCTTTCCAGTTTACAGGCAGCCGAAACCACCCGGCGGAGTTTATCCATTTCGGAGTTTAACCGGGTTTTA
GGCGGCGGTATAGTGCCGGGTTCGCTTATGCTTTTAGGGGGTGAACCGGGCATCGGCAAATCCACTCTGCTTCTTCAGGT
GGCGGCTTCGGTAGCCCAAAGCGGCGGCAAGGTAGTATATGTATCCGGGGAAGAAAACCCCGCCCAGATAAAAATGCGCG
CCCAACGCCTGGGTATCAGCGGCGAAGGGCTTTTCCTTATGGCTGAGACTGACCTTAATGCCATTTTAGCCCAGCTTTCA
GTTCTCTGCCCGTCACTGGTCGTTATTGACTCTATCCAGACTGTATTTCTGCCGGAGCTTGAGGCCGCACCCGGTGCTAT
AAATCAGGTGCGTGAATCAGCCCTCCGCCTGATGCAGTGGGCTAAAAGCAGCGGAGCCAGCGTATTTATAACCGCCCATG
TCACCAAAGAGGGAAACATAGCCGGGCCGCGTATACTGGAACATATAGTAGATGTGGTTATGTACTTTGAGGGAGAGTCC
CAGAGTGCTTACCGTTTAGTGCGTTCGGTCAAAAACCGTTTCGGTTCTACCAACGAAGTGGGTATATTTGAAATGAAAAG
TGAGGGTCTGGTAGAAGTGGCCAACCCTTCCCAGATATTTTTATCAAACCGCCAGGCAAATACGGTCGGTTCGGCTGTAA
CCGCTGTGCTGGAGGGCAGCCGCCCGCTGCTGGTTGAGGTGCAGGCACTTACCAATACCACCAGTTTCGGCCAGCCCCGC
CGCACCGCCAACGGGGTGGATTTTAACCGTACCCTTATGATAGCCGCTGTCCTCTCCAAACGCCTGTCCATGCGTTTAGG
TACCCAGGACATAATAGTCAATGCTACCGGCGGTATCCGTCTGGATGAGCCGGCCGCAGATTTAGCTATAGCTCTGGCCA
TTGCTTCCAGTTACCGTGATACCGGCGTCTGCCCAGAAACCATTGCTTTGGGGGAGATTGGTCTTTCTGGTGAACTGCGG
ACTATTCCCCATCTGGAAAGGCGTCTTTCCGAGGCCAGCCGTCTGGGTTTTAAGAGGGCTTTAGTACCGGCCGGTGCTAA
CTGCCACAATGTACATAATATCCAGATAATTCCGGTTTCAACTGTCAAAGAGGCGGTGAAGCTGGCACTTACCGGGGTAA
AAACGGAGACCGAAGATGTTTTTGAATGA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (63-218)

• Subunit ChlI of Mg-chelatase (ChlI) (342-424)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.109	99.351	0.498
radA	Streptococcus pneumoniae Rx1	48.578	98.918	0.481
radA	Streptococcus pneumoniae D39	48.578	98.918	0.481
radA	Streptococcus pneumoniae R6	48.578	98.918	0.481
radA	Streptococcus pneumoniae TIGR4	48.578	98.918	0.481
radA	Streptococcus mitis SK321	48.578	98.918	0.481
radA	Streptococcus mitis NCTC 12261	48.359	98.918	0.478